RNA preprints: Week 41 edition

Paternal easiRNAs regulate parental genome dosage in Arabidopsis. German Martinez, Philip Wolff, Zhenxing Wang, Jordi Moreno-Romero, Juan Santos-Gonzalez, Lei Liu Conze, Christopher DeFraia, Keith Slotkin, Claudia Kohler

microRNA-triggered transposon small RNAs mediate genome dosage response. Filipe Borges, Jean-Sebastien Parent, Frederic van Ex, Philip Wolff, German Martinez, Claudia Kohler, Robert A Martienssen

Csde1 binds transcripts involved in protein homeostasis and controls their expression in erythropoiesis. Kat S. Moore, Nurcan Yagci, Floris van Alphen, Nahuel A. Paolini, Rastislav horos, Ntsiki M. Held, Riekelt H. Houtkooper, Emile van den Akker, Alexander B. Meijer, Peter A. C. ‘t Hoen, Marieke von Lindern

N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi’s sarcoma-associated herpesvirus infection. Charles Hesser, John Karijolich, Dan Dominissini, Chuan He, Britt A. Glaunsinger

The kinetics of pre-mRNA splicing in the Drosophila genome: influence of gene architecture. Athma A Pai, Telmo Henriques, Kayla McCue, Adam Burkholder, Karen Adelman, Christopher B Burge

The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by a RNA-Mediated Dimerization Mechanism. Reuben Harris, Nadine Shaban, Ke Shi, Kate Lauer, Michael Carpenter, Christopher Richards, Michael Lopresti, Daniel Salamango, Jiayi Wang, Surajit Banerjee, William Brown, Hideki Aihara

Base-resolution mapping reveals distinct m1A methylome in nuclear- and mitochondrial-encoded transcripts. Xiaoyu Li, Xushen Xiong, Meiling Zhang, Kun Wang, Ying Chen, Jun Zhou, Yuanhui Mao, Jia Lv, Danyang Yi, Xiao-Wei Chen, Chu Wang, Shu-Bing Qian, Chengqi Yi

Sequence, Structure and Context Preferences of Human RNA Binding Proteins. Daniel Dominguez, Peter Freese, Maria S. Alexis, Amanda Su, Myles Hochman, Tsultrim Palden, Cassandra Bazile, Nicole J. Lambert, Eric L. Van Nostrand, Gabriel A. Pratt, Gene W. Yeo, Brenton Graveley, Christopher B. Burge

The optimization of mRNA expression level by its intrinsic properties — insights from codon usage pattern and structural stability of mRNA. Manish Prakash Victor, Debarun Acharya, Tina Begum, Tapash Chandra Ghosh

LIN28 selectively modulates a subclass of let-7 microRNAs. Dmytro Ustianenko, Hua-Sheng Chiu, Sebastien M. Weyn-Vanhentenryck, Pavel Sumazin, Chaolin Zhang

Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection. Maja Kriznik, Marko Petek, David Dobnik, Ziva Ramsak, Spela Baebler, Stephan Pollmann, Jan Kreuze, Jana Zel, Kristina Gruden

Transcriptomic Dynamics of a non-coding trinucleotide repeat expansion disorder SCA12 in iPSC derived neuronal cells: signatures of interferon induced response. Deepak Kumar, Parashar Dhapola, Ashaq Hussain, Rintu Kutum, Achal Kumar Srivastava, Mitali Mukerji, Odity Mukherjee, Mohammed Faruq

A unique, spliced varicella-zoster virus latency transcript represses expression of the viral transactivator gene 61. Daniel P. Depledge, Werner J. D. Ouwendijk, Tomohiko Sadaoka, Shirley E. Braspenning, Yasuko Mori, Randall Cohrs, Georges Verjans, Judith Breuer

Development of a riboswitch-based platform for live cell imaging of RNAs in mammalian cells. Esther Braselmann, Aleksandra J Wierzba, Jacob T Polaski, Mikołaj Chromiński, Dilara Batan, Dorota Gryko, Robert T Batey, Amy E Palmer

A mechanism for prime-realignment during influenza A virus replication. Judith Oymans, Aartjan te Velthuis

High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing. Julien Lagarde, Barbara Uszczynska-Ratajczak, Silvia Carbonell, Silvia Perez-Lluch, Amaya Abad, Carrie Davis, Thomas R. Gingeras, Adam Frankish, Jennifer Harrow, Roderic Guigo, Rory Johnson

Combined analysis of genome sequencing and RNA-motifs reveals novel damaging non-coding mutations in human tumors. Babita Singh, Juan Luis L Trincado Alonso, PJ Tatlow, Stephen R Piccolo, Eduardo Eyras

Backbone brackets and arginine tweezers delineate class I and class II aminoacyl tRNA synthetases. Florian Kaiser, Sebastian Bittrich, Sebastian Salentin, Christoph Leberecht, V. Joachim Haupt, Sarah Krautwurst, Michael Schroeder, Dirk Labudde

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello Palomares, Gracjan Michlewski

Initiation, elongation and realignment during influenza virus mRNA synthesis. Aartjan te Velthuis, Judith Oymans

The role of m6A-RNA methylation in stress response regulation. Mareen Engel, Simone Roeh, Carola Eggert, Paul M. Kaplick, Lisa Tietze, Janine Arloth, Peter Weber, Monika Rex-Haffner, Mira Jakovcevski, Manfred Uhr, Matthias Eder, Carsten T. Wotjak, Mathias V. Schmidt, Jan M. Deussing, Elisabeth B. Binder, Alon Chen

_________

Did we miss something? Let us know!

Advertisements

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s