RNA preprints: Week 47 edition

A Non-Classical Phase Diagram for Virus-Bacterial Co-Evolution Mediated by CRISPR. Pu Han, Michael W Deem

DDX3 is exploited by Arenaviruses to suppress type I interferons and favor their replication. Maria Eugenia Loureiro, Andre Luiz Zorzetto-Fernandes, Sheli Radoshitzky, Xiaoli Chi, Simone Dallari, Nuha Marooki, Psylvia Leger, Sabrina Foscaldi, Sonia Sharma, Nora Lopez, Juan Carlos de la Torre, Sina Bavari, Elina Zuniga

Improving bioinformatics prediction of microRNA targets by ranks aggregation. Aurélien Quillet, Chadi Saad, Gaëtan Ferry, Youssef Anouar, Nicolas Vergne, Thierry Lecroq, Christophe Dubessy

Re-arrangements in the cytoplasmic distribution of small RNAs following the maternal-to-zygotic transition in Drosophila embryos. Mehmet Ilyas Cosacak, Hatice Yigit, Bunyamin Akgul

Altered hsrω lncRNA levels in activated Ras background further enhance Ras activity in Drosophila eye and induces more R7 photoreceptors. Subhash C Lakhotia, Mukulika Ray

Chromatin-release of the long ncRNA A-ROD is required for transcriptional activation of its target gene DKK1. Evgenia Ntini, Julia Liz, Jose M Muino, Annalisa Marsico, Ulf Andersson Oerom

Non-coding Transcriptome Maps Across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye. Hyosun Hong, Han-Ha Chai, Kyoungwoo Nam, Dajeong Lim, Kyung-Tai Lee, Yoon Jung Do, Chang-Yeon Cho, Jin-Wu Nam

Spliceosome profiling visualizes the operations of a dynamic RNP in vivo at nucleotide resolution. Jordan Burke, Adam Longhurst, Daria Merkurjev, Jade Sales-Lee, Beiduo Rao, James Moresco, John Yates III, Jingyi Jessica Li, Hiten D Madhani

miR-16 suppresses growth of rhabdoid tumor cells. Emily K Stroup, Yunku Yeu, Albert Budhipramono, Tae Hyun Hwang, Dinesh Rakheja, Anat Erdreich-Epstein, Theodore W. Laetsch, James F Amatruda, Kenneth S Chen

Prediction of potential disease-associated microRNAs using structural perturbation method. Xiangxiang Zeng, Li Liu, Linyuan Lu, Quan Zou

Blind prediction of noncanonical RNA structure at atomic accuracy. Andrew Martin Watkins, Caleb Geniesse, Wipapat Kladwang, Paul Zakrevsky, Luc Jaeger, Rhiju Das

Computational Design of Asymmetric Three-dimensional RNA Structures and Machines. Joseph D Yesselman, Daniel Eiler, Erik D Carlson, Alexandra N Ooms, Wipapat Kladwang, Xuesong Shi, David A Costantino, Daniel Herschlag, Michael C Jewett, Jeffrey S Kieft, Rhiju Das

Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism. Muhammad S. Azam, Carin K. Vanderpool

Arabidopsis U1 snRNP subunit LUC7 functions in alternative splicing and preferential removal of terminal introns. Marcella de Francisco Amorim, Eva-Maria Willing, Irina Droste-Borel, Boris Macek, Korbinian Schneeberger, Sascha Laubinger

viGEN: An open source pipeline for the detection and quantification of viral RNA in human tumors. Krithika Bhuvaneshwar, Lei Song, Subha Madhavan, Yuriy Gusev

A Rice Dual-localized Pentatricopeptide Repeat Protein is involved in Organellar RNA Editing with MORFs. Haijun Xiao, Yanghong Xu, Chenzi Ni, Qiannan Zhang, Feiya Zhong, Jishuai Huang, Yingguo Zhu, Jun Hu

A Web-resource for Nutrient Use Efficiency related Genes, QTLs, and microRNA in important cereals and model plants. Anuj Kumar, Ajay Pandeya, Girik Malik, Hima Kumari P, Anil Kumar S, Mansi Sharma, Vijay Gahlaut, Prasad MNV Gajula, Prashanth Suravajhala, Krishna Pal Singh, Harindra Singh Balyan, Pushpendra Kumar Gupta

Single-molecule fluorescent amplification of RNA using clampFISH probes. Sara H Rouhanifard, Margaret Dunagin, Ian A Mellis, Sareh Bayatpour, Orsolya Symmons, Allison Cote, Arjun Raj

Cytoplasmic import and processing of mRNA amplify transcriptional bursts accounting for the majority of cellular noise. Maike M. K. Hansen, Ravi V. Desai, Michael L. Simpson, Leor S. Weinberger

Interplay of target site architecture and miRNA abundance determine miRNA activity and specificity. Giovanna Brancati, Sarah H Carl, Helge Grosshans

_________

Did we miss something? Let us know!

Advertisements

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s