RNA preprints: Week 49 edition

Gene network analysis identifies a central post-transcriptional regulator of cellular stress survival. Matthew Z. Tien, Aretha Fiebig, Sean Crosson

Antisense transcriptional interference mediates condition-specific gene repression in budding yeast. Alicia Nevers, Antonia Doyen, Christophe Malabat, Bertrand Neron, Thomas Kergrohen, Alain Jacquier, Gwenael Badis

Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES. Israel S Fernández, Vera P Pisareva, Andrey V Pisarev

Conformational Ensemble of RNA Oligonucleotides from Reweighted Molecular Simulations. Sandro Bottaro, Giovanni Bussi, Scott D Kennedy, Douglas H Turner, Kresten Lindorff-Larsen

Transfer RNA genes experience exceptionally elevated mutation rates. Bryan Thornlow, Josh Hough, Jackie Roger, Henry Gong, Todd Lowe, Russell Corbett-Detig

pysster: Learning Sequence and Structure Motifs in DNA and RNA Sequences using Convolutional Neural Networks. Stefan Budach, Annalisa Marsico

Allosteric effector ppGpp potentiates the inhibition of transcript initiation by DksA. Vadim Molodtsov, Elena Sineva, Lu Zhang, Xuhui Huang, Michael Cashel, Sarah E. Ades, Katsuhiko Murakami

Development of an in vitro pre-mRNA splicing assay using plant nuclear extract. Mohammed Albaqami, Anireddy Reddy

Barley Long Non-Coding RNAs and Their Tissue-Specific Co-expression Pattern with Coding-Transcripts. Gokhan Karakulah, Turgay Unver

Engineering a promiscuous pyrrolysyl-tRNA synthetase by a high throughput FACS screen. Adrian Hohl, Ram Karan, Anstassja Akal, Dominik Renn, Xuechao Liu, Alaguraj Dharamarajnadar, Seema Arun Ghoprade, Michael Groll, Magnus Rueping, Jörg Eppinger

A-to-I RNA editing uncovers hidden signals of adaptive genome evolution in animals. Niko Popitsch, Christian D. Huber, Ilana Buchumenski, Eli Eisenberg, Michael Jantsch, Arndt von Haeseler, Miguel Gallach

Transcription activation domains of the yeast factors Met4 and Ino2: tandem activation domains with properties similar to the yeast Gcn4 activator. Derek Pacheco, linda warfield, michelle brajcich, hannah robbins, jie luo, jeff ranish, Steven Hahn

Targeted RNA knockdown by crRNA guided Csm in zebrafish. Thomas Fricke, Gintautas Tamulaitis, Dalia Smalakyte, Michal Pastor, Agnieszka Kolano, Virginijus Siksnys, Matthias Bochtler

Attention based convolutional neural network for predicting RNA-protein binding sites. Xiaoyong Pan, Junchi Yan


That’s a wrap! Did we miss something? Let us know!



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