RNA preprints: W2/2018

ZFP36 RNA-binding proteins restrain T-cell activation and anti-viral immunity. Michael J Moore, Nathalie E Blachere, John J Fak, Christopher Y Park, Kirsty Sawicka, Salina Parveen, Ilana Zucker-Scharff, Bruno Moltedo, Alexander Rudensky, Robert Darnell

Precise temporal regulation of alternative splicing during neural development. Sebastien M Weyn-Vanhentenryck, Huijuan Feng, Dmytro Ustianenko, Rachel Duffie, Qinghong Yan, Martin Jacko, Jose C Martinez, Marianne Goodwin, Xuegong Zhang, Ulrich Hengst, Stavros Lomvardas, Maurice S Swanson, Chaolin Zhang

Small interfering RNAs based on huntingtin trinucleotide repeats are highly toxic to cancer cells. Andrea E Murmann, Quan Q Gao, William Putzbach, Monal Patel, Elizabeth T Bartom, Calvin Law, Bryan Bridgeman, Siquan Chen, Kaylin M McMahon, C Shad Thaxton, Marcus Ernst Peter

Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. Trine B Rounge, Sinan U Umu, Andreas Keller, Eckart Meese, Giske Ursin, Steinar Tretli, Robert Lyle, Hilde Langseth

NET-prism enables RNA polymerase-dedicated transcriptional interrogation at nucleotide resolution. Constantine Mylonas, Peter Tessarz

Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins. Ryan M Allen, Shilin Zhao, Marisol A. Ramirez-Solano, Danielle L. Michell, Yuhuan Wang, Yu Shyr, Praveen Sethupathy, MacRae F Linton, Greg A Graf, Quanhu Sheng, Kasey C Vickers

RMalign: an RNA structural alignment tool based on a size independent scoring function. Zheng Jinfang, Juan Xie, Xu Hong, Shiyong Liu

miR-132 controls mouse pancreatic beta cell proliferation and survival through the Pten/Akt/Foxo3 signaling. Hassan Mziaut, Georg Henniger, Katharina Ganss, Sebastian Hempel, Steffen Wolk, Johanna McChord, Kamal Chowdhury Chowdhury, Klaus Peter Knoch, Jurgen Weitz, Robert Grutzmann, Christian Pilarsky, Michele Solimena, Stephan Kersting

Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer. Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane Tsukamoto Kagohara, Genevieve L Stein-O’Brien, Dylan Kelley, Emily Flam, Kristina D Zambo, Patrick Ha, Donald Geman, Michael F Ochs, Joseph A Califano, Daria A Gaykalova, Alexander V Favorov, Elana J Fertig

RNA helicase, DDX27 regulates skeletal muscle growth and regeneration by modulation of translational processes. Alexis H Bennett, Marie Francoise O’Donohue, Stacey R Gundry, Aye T Chan, Jeffery Widrick, Isabelle Draper, Anirban Chakraborty, Yi Zhou, Leonard I Zon, Pierre-Emmanuel Gleizes, Alan H Beggs, Vandana A Gupta

Identification of differentially expressed small RNAs and prediction of target genes in Italian Large White pigs with divergent backfat deposition. Roberta Davoli, Enrico Gaffo, Martina Zappaterra, Stefania Bortoluzzi, Paolo Zambonelli

Differential 3′ Processing of Specific Transcripts Expands Regulatory and Protein Diversity Across Neuronal Cell Types. Sasa Jereb, Hun-Way Hwang, Eric Van Otterloo, Eve-Ellen Govek, John J Fak, Yuan Yuan, Mary E Hatten, Robert B Darnell

Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster. Michael P. Meers, Karen Adelman, Robert J. Duronio, Brian D. Strahl, Daniel J. McKay, A. Gregory Matera

Benchmark of lncRNA Quantification for RNA-Seq of Cancer Samples. Hong Zheng, Kevin Brennan, Mikel Hernaez, Olivier Gevaert

In silico design of ligand triggered RNA switches. Sven Findeiß, Stefan Hammer, Michael T. Wolfinger, Felix Kühnl, Christoph Flamm, Ivo L. Hofacker

Neuron-specific cTag-CLIP reveals cell-specific diversity of functional RNA regulation in the brain. Yuhki Saito, Yuan Yuan, Ilana Zucker-Scharff, John J Fak, Yoko Tajima, Donny D Licatalosi, Robert B Darnell

Varicella-zoster virus CNS vasculitis and RNA polymerase III gene mutation in identical twins. Madalina Carter-Timofte, Anders Fogh Hansen, Maibritt Mardahl, Sébastien Fribourg, Franck Rapaport, Shen-Ying Zhang, Jean-Laurent Casanova, Søren R Paludan, Mette Christiansen, Carsten S Larsen, Trine H Mogensen

Cell type-specific CLIP reveals that NOVA regulates cytoskeleton interactions in motoneurons. Yuan Yuan, Shirley Xie, Jennifer C Darnell, Andrew J Darnell, Yuhki Saito, Hemali Phatnani, Elisabeth A Murphy, Chaolin Zhang, Tom Maniatis, Robert B Darnell

HOTAIR primes the Ewing sarcoma family of tumors for tumorigenesis via epigenetic dysregulation involving LSD1. Hasan Siddiqui, Julia Selich-Anderson, Joshua Felgenhauer, James Fitch, Vijay Nadella, Cenny Taslim, Laura Tomino, Emily Theisen, Satoru Otsuru, Edwin Horwitz, Stephen L Lessnick, Peter White, Nilay Shah

Fidaxomicin jams M. tuberculosis RNA polymerase motions needed for initiation via RbpA contacts. Hande Boyaci, James Chen, Mirjana Lilic, Margaret Palka, Rachel Anne Mooney, Robert Landick, Seth A Darst, Elizabeth A Campbell

Deconvolving RNA Base Pairing Signals. Torin Greenwood, Christine E. Heitsch

The effect of RNA stiffness on the self-assembly of virus particles. Siyu Li, Gonca Erdemci-Tandogan, Paul van der Schoot, Roya Zandi

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That’s a wrap! Did we miss something? Let us know!

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