RNA preprints: W3/2018

Transgenerational Epigenetic Inheritance Factors Localize to Spatially and Temporally Ordered Liquid Droplet Assemblages. Gang Wan, Brandon Fields, George Spracklin, Carolyn Phillips, Scott Kennedy

Cell-type specific expression of oncogenic and tumor suppressive microRNAs in the human prostate and prostate cancer. Binod Kumar, Avi Z Rosenberg, Su Mi Choi, Karen Fox-Talbot, Angelo M De Marzo, Larisa Nonn, W. Nathaniel Brennen, Luigi Marchionni, Marc K Halushka, Shawn E Lupold

RNA polymerase II pausing regulates a quiescence-dependent transcriptional program, priming cells for cell cycle reentry. Hardik P Gala, Debarya Saha, Nisha Venugopal, Ajoy Aloysius, Jyotsna Dhawan

miRge 2.0: An updated tool to comprehensively analyze microRNA sequencing data. YIn Lu, Alexander S Baras, Marc K Halushka

Programmable RNA recognition using a CRISPR-associated Argonaute. Audrone Lapinaite, Jennifer A. Doudna, Jamie Cate

HSF2 Co-regulates Protein-coding and Long Non-coding RNA Genes Specific to Black Tissues of the Black Chicken, Yeonsan Ogye. Hyosun Hong, Han-Ha Chai, Kyoungwoo Nam, Dajeong Lim, Kyung-Tai Lee, Yoon Jung Do, Chang-Yeon Cho, Jin-Wu Nam

Conserved and ubiquitous expression of piRNAs and PIWI genes in mollusks antedates the origin of somatic PIWI/piRNA expression to the root of bilaterians. Julia Jehn, Daniel Gebert, Frank Pipilescu, Sarah Stern, Julian Simon Thilo Kiefer, Charlotte Hewel, David Rosenkranz

MicroRNA-122 supports robust innate immunity in hepatocytes by suppressing STAT3 phosphorylation. Hui Xu, Shi-Jun Xu, Shu-Juan Xie, Yin Zhang, Jian-Hua Yang, Wei-Qi Zhang, Man-Ni Zheng, Hui Zhou, Liang-Hu Qu

Genome-encoded Cytoplasmic Double-Stranded RNAs, Found in C9ORF72 ALS-FTD Brain, Provoke Propagated Neuronal Death. Steven Rodriguez, Benjamin R Schrank, Asli Sahin, Hawra Al-Lawati, Isabel Constantino, Eric Benz, Darian Fard, Alefiya D Albers, Luxiang Cao, Alexis C Gomez, Elena Ratti, Merit Cudkowicz, Matthew P Frosch, Michael Talkowski, Peter K Sorger, Bradley T Hyman, Mark W Albers

MicroRNA regulation of the MRN complex impacts DNA damage, cellular senescence and angiogenic signaling. Cristina Espinosa-Diez, RaeAnna Wilson, Namita Chatterjee, Clayton Hudson, Rebecca Ruhl, Christina Hipfinger, Erin Helms, Omar F Khan, Daniel G Anderson, Sudarshan Anand

In search of non-coding driver mutations by deep sequencing of regulatory elements in colorectal cancer. Rebecca C Poulos, Dilmi Perera, Deborah Packham, Anushi Shah, Caroline Janitz, John E Pimanda, Nicholas Hawkins, Robyn L Ward, Luke B Hesson, Jason WH Wong

miR-10b Deficiency Affords Atherosclerosis Resistance. Masako Nakahara, Norihiko Kobayashi, Masako Oka, Kenta Nakano, Tadashi Okamura, Akira Yuo, Kumiko Saeki

MicroRNA-92a negatively regulates neurofibromin 2 and inhibits its tumor suppressive function. Krizelle Mae M. Alcantara, Reynaldo L Garcia

De novo mutations involved in post-transcriptional dysregulation contribute to six neuropsychiatric disorders. Fengbiao Mao, Lu Wang, Xiaolu Zhao, Luoyuan Xiao, Xianfeng Li, Qi Liu, Xin He, Rajesh C. Rao, Jinchen Li, Huajing Teng, Yali Dou, Zhongsheng Sun

Efficient computation of co-transcriptional RNA-ligand interaction dynamics. Michael T Wolfinger, Christoph Flamm, Ivo L Hofacker

miRNAs play important roles in aroma weakening during the shelf life of ‘Nanguo’ pear after cold storage. Fei Shi, Xin Zhou, Miaomiao Yao, Zhuo Tan, Qian Zhou, Lei Zhang, Shujuan Ji

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