RNA preprints: W5/2018

Defective RNA Polymerase III is negatively regulated by the SUMO-Ubiquitin-Cdc48 Pathway. Zheng Wang, Catherine Wu, Aaron Aslanian, Tony Hunter, John R Yates III

Xist Intron 1 Repression by TALE Transcriptional Factor Improves Somatic Cell Reprogamming in Mice. Jindun Zhang, Xuefei Gao, Jian Yang, Xiaoying Fan, Wei Wang, Yanfeng Liang, Lihong Fan, Hongmei Han, Xiaorong Xu, Fuchou Tang, Siqin Bao, Pentao Liu, Xihe Li

Genome-wide transcriptome analysis identifies alternative splicing regulatory network and key splicing factors in mouse and human psoriasis. Jin Li, Peng Yu

MiR-21 Regulates Metabolic Adaptation of TH17 Cells during Autoimmunity and Host Defence. Xiang Yu, Li Wang, Chao Yao, Rong Qiu, Yan Ge Cui, Dai Dai, Jun Deng, Guo Jun Hou, Yan Wang, Jie Qian, Ye Ouyang, Yu Ting Qin, Bo Qu, Hai Bo Zhou, You Cun Qian, Yuan Jia Tang, Nan Shen

Rbfox splicing factors maintain skeletal muscle mass by regulating calpain3 and proteostasis. Ravi K Singh, Arseniy M. Kolonin, Marta L. Fiorotto, Thomas A. Cooper

Tetracyclines Modify Translation By Targeting Key Human rRNA Substructures. Jonathan D Mortison, Monica Schenone, Jacob A Myers, Ziyang Zhang, Linfeng Chen, Christie Ciarlo, Eamon Comer, S. Kundhavai Natchiar, Steven A Carr, Bruno P Klaholz, Andrew G Myers

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data. Michelle J Wu, Johan OL Andreasson, Wipapat Kladwang, William J Greenleaf, Eterna participants, Rhiju Das

Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases. Florian Kaiser, Sebastian Bittrich, Sebastian Salentin, Christoph Leberecht, V. Joachim Haupt, Sarah Krautwurst, Michael Schroeder, Dirk Labudde

The evolutionary dynamics of microRNAs in domestic mammals. Luca Penso Dolfin, Simon Moxon, Wilfried Haerty, Federica Di Palma

DNA Topoisomerase I differentially modulates R-loops across the human genome. Stefano Manzo, Stella Regina Hartono, Lionel Sanz, Sara De Biasi, Andrea Cossarizza, Giovanni Capranico, Frederic Chedin

The plasma miR-122 basal levels respond to circulating catecholamine in rats. Xu Peng, Qiao Li, Song Lu, Xueling He, Sisi Yu, Zhihui Zhang, Guohui Xu, Lu Li, Tinghan Yang, Jiang Zhu, Wenli Zhu, Zhigang Wu, Delun Luo, Jue Zhu, Binghe Xu, Jian Huang, Hailin Yin, Kai Xu

A stable mode of bookmarking by TBP recruits RNA Polymerase II to mitotic chromosomes. Sheila S Teves, Luye An, Aarohi Bhargava-Shah, Liangqi Xie, Xavier Darzacq, Robert Tjian

Association of a lincRNA postmortem with suicide by violent means and in vivo with aggressive phenotypes. Giovanna Punzi, Gianluca Ursini, Giovanna Viscanti, Eugenia Radulescu, Joo Heon Shin, Tiziana Quarto, Roberto Catanesi, Giuseppe Blasi, Andrew Jaffe, Amy Deep-Soboslay, Thomas Hyde, Joel Kleinman, Alessandro Bertolino, Daniel Weinberger

N6-methyladenosine Binding Proteins Negatively Regulate HIV-1 Infectivity and Viral Production. Wuxun Lu, Nagaraja Tirumuru, Pratibha C. Koneru, Chang Liu, Mamuka Kvaratskhelia, Chuan He, Li Wu

Intron-mediated enhancement boosts Rtn4 circRNA expression: A robust method for exploring circRNA function. Dingding Mo, Xinping Li

Determining rewiring effects of alternatively spliced isoforms on protein-protein interactions using a computational approach. Oleksandr Narykov, Nathan Johnson, Dmitry Korkin

Cryo-EM structure of Escherichia coli σ70 RNAP and promoter DNA complex revealed a role of σ nonconserved region during the open complex formation. Anoop Narayanan, Frank S. Vago, Kungpeng Li, M. Zuhaib Qayyum, Dinesh Yernool, Wen Jiang, Katsuhiko Murakami

The contribution of non-canonical splicing mutations to severe dominant developmental disorders. Jenny Lord, Giuseppe Gallone, Patrick J. Short, Jeremy F. McRae, Holly Ironfield, Elizabeth H. Wynn, Sebastian S. Gerety, Liu He, Bronwyn Kerr, Diana S. Johnson, Emma McCann, Esther Kinning, Frances Flinter, I. Karen Temple, Jill Clayton-Smith, Meriel McEntagart, Sally Ann Lynch, Shelagh Joss, Sofia Douzgou, Tabib Dabir, Virginia Clowes, Vivienne P. M. McConnell, Wayne Lam, Caroline F. Wright, David R. FitzPatrick, Helen V. Firth, Jeffrey C. Barrett, Matthew E. Hurles, on behalf of the DDD study

A role for RNA and DNA:RNA hybrids in the modulation of DNA repair by homologous recombination. Giuseppina D’Alessandro, Marek Adamowicz, Donna Whelan, Sean Michael Howard, Corey Winston Jones-Weinert, Valentina Matti, Eli Rothenberg, Petr Cejka, Fabrizio d’Adda di Fagagna

Global analysis of gene expression dynamics identifies factors required for accelerated mRNA degradation. Darach Miller, Nathan Brandt, David Gresham

COSSMO: Predicting Competitive Alternative Splice Site Selection using Deep Learning. Hannes Bretschneider, Shreshth Gandhi, Khalid Zuberi, Amit G Deshwar, Brendan J Frey

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That’s a wrap! Anything missing? Shoot an email.

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