RNA preprints: W6/2018

miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR-186-5p as a potential retroviral restriction factor in macrophages. Zezhou Zhao, Dillon C Muth, Kathleen Mulka, Bonita H Powell, Grace V Hancock, Zhaohao Liao, Kelly A Metcalf Pate, Kenneth W Witwer

Effects of mRNA degradation and site-specific transcriptional pausing on protein expression noise. Sangjin Kim, Christine Jacobs-Wagner

A folded viral noncoding RNA blocks host cell exoribonucleases through programmed remodeling of RNA structure. Anna-Lena Steckelberg, Benjamin M Akiyama, David A Costantino, Tim L Sit, Jay C Nix, Jeffrey S Kieft

IFIT3 and IFIT2/3 promote IFIT1-mediated translation inhibition by enhancing binding to non-self RNA. Renata C Fleith, Harriet V Mears, Edward Emmott, Stephen C Graham, Daniel S Mansur, Trevor R Sweeney

Identification of piRNA binding sites reveals the Argonaute regulatory landscape of the C. elegans germline. En-Zhi Shen, Hao Chen, Ahmet R. Ozturk, Shikui Tu, Masaki Shirayama, Wen Tang, Yue-He Ding, Si-Yuan Dai, Zhiping Weng, Craig C. Mello

Identification and characterization of moonlighting long non-coding RNAs based on RNA and protein interactome. Lixin Cheng, Kwong-Sak Leung

Concentration of 2’C-methyladenosine triphosphate by Leishmania guyanensis enables specific inhibition of Leishmania RNA virus 1 via its RNA polymerase. John I. Robinson, Stephen M. Beverley

psichomics: graphical application for alternative splicing quantification and analysis. Nuno Saraiva-Agostinho, Nuno L. Barbosa-Morais

Prediction of the secondary structure at the tRNASer (UCN) of Lutzomyia longipalpis (Diptera: Psychodidae). Richard Hoyos-Lopez

Mitigating the lack of knowledge about long noncoding RNA: extracting biological functions. Yagoub Ali Ibrahim Adam, Evandro Eduardo Seron Ruiz, Alessandra Alaniz Macedo

DROSHA associates to DNA damage sites and is required for DNA repair. Matteo Cabrini, Marco Roncador, Alessandro Galbiati, Lina Cipolla, Fabio Iannelli, Simone Sabbioneda, Fabrizio d’Adda di Fagagna, Sofia Francia

ASGAL: Aligning RNA-Seq Data to a Splicing Graph to Detect Novel Alternative Splicing Events. Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni

Blind prediction of noncanonical RNA structure at atomic accuracy. Andrew Martin Watkins, Caleb Geniesse, Wipapat Kladwang, Paul Zakrevsky, Luc Jaeger, Rhiju Das

The role of Aβ circRNA in Alzheimer’s disease. Dingding Mo

Template switching causes artificial junction formation and false identification of circular RNAs. Chong Tang, Tian Yu, Yeming Xie, Zhuqing Wang, Hayden McSwiggin, Ying Zhang, Huili Zheng, Wei Yan

MirGeneDB2.0: the curated microRNA Gene Database. Bastian Fromm, Diana Domanska, Michael Hackenberg, Anthony Mathelier, Eirik Hoye, Morten Johansen, Eivind Hovig, Kjersti Flatmark, Kevin J Peterson

The TRIM-NHL protein NHL-2 is a Novel Co-Factor of the CSR-1 and HRDE-1 22G-RNA Pathways. Peter R Boag, Gregory M Davis, Shikui Tu, Rhys N Colson, Joshua W. T. Anderson, Menachem J Gunzburg, Michelle A Francisco, Debashish Ray, Tuhin Maity, Monica Z Wu, Quaid D Morris, Timothy R Hughes, Jacqueline A Wilce, Julie Claycomb, Zhiping Weng


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