RNA preprints: W8/2018

CTD-dependent and -independent mechanisms govern co-transcriptional capping of Pol II transcripts. Melvin Noe Gonzalez, Shigeo Sato, Chieri Tomomori-Sato, Joan W. Conaway, Ronald C. Conaway

MCRiceRepGP: a framework for identification of sexual reproduction associated coding and lincRNA genes in rice. Agnieszka A Golicz, Prem L Bhalla, Mohan B Singh

Enhancer RNAs are necessary and sufficient for activity-dependent neuronal gene transcription. Nancy V.N. Gallus, Rhiana A. Simon, Aaron J Salisbury, Jasmin S. Revanna, Kendra D. Bunner, Katherine E. Savell, Faraz A. Sultan, Charles A. Gersbach, Jeremy J. Day

GTSF-1 is required for the formation of a functional RNA-dependent RNA Polymerase complex in C. elegans. Miguel V. Almeida, Sabrina Dietz, Stefan Redl, Emil Karaulanov, Andrea Hildebrandt, Christian Renz, Helle D. Ulrich, Julian König, Falk Butter, René F. Ketting

Sexual stage-induced long noncoding RNAs in the filamentous fungus Fusarium graminearum. Wonyong Kim, Cristina Miguel-Rojas, Jie Wang, Jeffrey P Townsend, Frances Trail

Towards comprehensive characterization of CRISPR-linked genes. Sergey A Shmakov, Kira S Makarova, Yuri I Wolf, Konstantin V Severinov, Eugene V Koonin

Intron-mediated enhancement is not limited to introns. Jenna E Gallegos, Alan B Rose

Evidence for functional and non-functional classes of peptides translated from long non-coding RNAs. Jorge Ruiz-Orera, Pol Verdaguer-Grau, José Luis Villanueva-Cañas, Xavier Messeguer, M Mar Albà

ADAR1 A-to-I RNA editing alters codon usage. Pavla Brachova, Nehemiah S Alvarez, Xiaoman Hong, Kailey A. Vincent, Keith E. Latham, Lane K. Christenson

EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins. Pritha Ghosh, Niang Guita, Bernard Offmann, Ramanathan Sowdhamini

hRBPome: a central repository of all known human RNA-binding proteins. Pritha Ghosh, Pavalam Murugavel, Ramanathan Sowdhamini

MicroRNA-132 provides neuroprotection for tauopathies via multiple signaling pathways. Rachid EL Fatimy, Shaomin Li, Zhicheng Chen, Tasnim Mushannen, Sree Gongala, Zhiyun Wei, Darrick T. Balu, Rosalia Rabinovsky, Adam Cantlon, Abdallah Elkhal, Dennis J. Selkoe, Kai C. Sonntag, Dominic M. Walsh, Anna M. Krichevsky

Dual-layer transposon repression in heads of Drosophila melanogaster. Marius van den Beek, Bruno da Silva, Juliette Pouch, Mohammed el amine Ali Chaouche, Clément Carré, Christophe Antoniewski

Matrin 3-dependent neurotoxicity is modified by nucleic acid binding and nucleocytoplasmic localization. Ahmed Malik, Roberto Miguez, Xingli Li, Ye-Shih Ho, Eva Feldman, Sami Barmada

psichomics: graphical application for alternative splicing quantification and analysis. Nuno Saraiva-Agostinho, Nuno L. Barbosa-Morais

A genome-wide miRNA screen identifies regulators of tetraploid cell proliferation. Marc A Vittoria, Elizabeth M Shenk, Kevin P O’Rourke, Amanda F Bolgioni, Sanghee Lim, Victoria Kacprzak, Ryan J Quinton, Neil J Ganem

Exosomes and exosomal miRNAs from muscle-derived fibroblasts promote skeletal muscle fibrosis. Marina Mora, Simona Zanotti, Sara Gibertini, Flavia Blasevich, Cinzia Bragato, Simona Saredi, Clelia Introna, Pia Bernasconi, Lorenzo Maggi, Renato Mantegazza

Evolution of subgenomic RNA shapes dengue virus adaptation and epidemiological fitness. Esteban Finol, Eng Eong Ooi

QsRNA-seq: a method for high-throughput profiling and quantifying small RNAs. Alla Fishman, Dean Light, Ayelet T Lamm

Differential Expression of Coding and Long Noncoding RNAs in Keratoconus-affected Corneas. Mariam Lofty Khaled, Yelena Bykhovskaya, Sarah ER Yablonski, Hanzhou Li, Michelle D Drewry, Inas F Aboobakar, Amy Estes, Xiaoyi Gao, W. Daniel Stamer, Hongyan Xu, R. Rand Allingham, Michael A. Hauser, Yaron S Rabinowitz, Yutao Liu

TAS3 miR390-dependent loci in non-vascular land plants: Towards a comprehensive reconstruction of the gene evolutionary history. Sergey Y. Morozov, Irina A. Milyutina, Tatiana N. Erokhina, Liudmila V. Ozerova, Alexey V. Troitsky, Andrey G. Solovyev

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