RNA preprints: W13/2018

Protein structure and function analyses to understand the implication of mutually exclusive splicing. Su Datt Lam, Christine Orengo, Jonathan Lees

Small RNA-mediated genomic silencing promotes telomere stability in the absence of telomerase. Charlie Longtine, Stephen Frenk, shawn ahmed

Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network. Andrew Dhawan, Adrian L. Harris, Francesca M Buffa, Jacob G Scott

Estimating RNA structure chemical probing reactivities from reverse transcriptase stops and mutations. Angela M Yu, Molly E. Evans, Julius B. Lucks

In vitro assembly of an early spliceosome defining both splice sites. Kaushik Saha, Mike Minh Fernandez, Tapan Biswas, Charles Leonard Lumba, Gourisankar Ghosh

A post-transcriptional regulatory code for mRNA stability during the zebrafish maternal-to-zygotic transition. Charles E Vejnar, Mario Abdel Messih, Carter M Takacs, Valeria Yartseva, Panos Oikonomou, Romain Christiano, Marlon Stoeckius, Stephanie Lau, Miler T Lee, Jean-Denis Beaudoin, Hiba Darwich-Codore, Tobias C Walther, Saeed Tavazoie, Daniel Cifuentes, Antonio J Giraldez

Exonic unpaired elements modulate pre-mRNA structure for splice site recognition. Kaushik Saha, Tapan Biswas, Mike Minh Fernandez, Whitney England, Robert Spitale, Gourisankar Ghosh

Coding and non-coding RNA dysregulation in bipolar disorder. Jurjen Luykx, Fabrizio Giuliani, Giuliano Giuliani, Jan Veldink

A fungal ribonuclease-like effector protein inhibits plant host ribosomal RNA degradation. Pietro D Spanu, Helen G Pennington, Rhian Jones, Seomun Kwon, Giulia Bonciani, Hannah Thieron, Thomas Chandler, Peggy Luong, Sian Morgan, Michal Przydacz, Tolga O. Bozkurt, Sarah Bowden, Melanie Craze, Emma Wallington, James Garnett, Mark Kwaitaal, Ralph Panstruga, Ernesto Cota

Germline silencing of UASt depends on the piRNA pathway. Yi-Chun Huang, Henry Moreno, Sarayu Row, Dongyu Jia, Wu-Min Deng

The cellular NMD pathway restricts Zika virus infection and is targeted by the viral capsid protein. Krystal A Fontaine, Kristoffer E Leon, Mir Mubashir Khalid, David Jimenez-Morales, Julia Kaye, Priya Shah, Steven Finkbeiner, Nevan Krogan, Melanie Ott

Quantitative characterization of translational riboregulators using an in vitro transcription-translation system. Anis Senoussi, Jonathan Lee Tin Wah, Yoshihiro Shimizu, Jerome Robert, Alfonso Jaramillo, Sven Findeiss, Ilka M Axmann, Andre Estevez-Torres

Complete guide RNA design for CRISPR-mediated regulation of human long noncoding RNA transcription. Amir Saberi, Renjun Zhu, Chulan Kwon

Identification of microRNA clusters cooperatively acting on Epithelial to Mesenchymal Transition in Triple Negative Breast Cancer. Laura Cantini, Gloria Bertoli, Claudia Cava, Thierry Dubois, Andrei Zinovyev, Michele Caselle, Isabella Castiglioni, Emmanuel Barillot, Loredana Martignetti

Numerous recursive sites contribute to accuracy of splicing of long introns in flies. Athma A Pai, Joseph Paggi, Karen Adelman, Christopher B Burge

Intronic non-coding RNAs within ribosomal protein coding genes can regulate biogenesis of yeast ribosome. Akshara Pande, Rani Sharma, Bharat Ravi Iyengar, Vinod Scaria, Beena Pillai, Samir K Brahmachari

Onset of differentiation is posttranscriptionally controlled in adult neural stem cells. Avni Baser, Yonglong Dang, Maxim Skabkin, Guelce Guelcueler Balta, Georgios Kalamakis, Susanne Kleber, Manuel Goepferich, Roman Schefzik, Alejandro Santos Lopez, Enric Llorens Bobadilla, Carsten Schultz, Bernd Fischer, Ana Martin-Villalba

Alanine tRNAs translate environment into behavior in Caenorhabditis elegans. Diana Andrea Fernandes De Abreu, Thalia Salinas-Giege, Laurence Marechal-Drouard, Jean-Jacques Remy

The formation of intramolecular secondary structure brings mRNA ends in close proximity. Wan-Jung C Lai, Mohammad Kayedkhordeh, Erica V Cornell, Elie Farah, Stanislav Bellaousov, Robert Rietmeijer, David H Mathews, Dmitri N Ermolenko

Small non-coding RNA expression in developing mouse nephron progenitor cells. Yu Leng Phua, Andrew Clugston, Kevin Hong Chen, Dennis Kostka, Jacqueline Ho

Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis. Taro Maeda, Yuuki Kobayashi, Hiromu Kameoka, Nao Okuma, Naoya Takeda, Katsushi Yamaguchi, Takahiro Bino, Shuji Shigenobu, Masayoshi Kawaguchi

Competing endogenous RNA network: Potential entrants to gene editing in Hepatocellular Carcinoma. Ayman Shafei, Marwa Matboli, Mahmoud Ali, Ziad Nagy, Maged Reda, Mohamed Salah, Ahmed Hamdy, Mahmoud Abdelgawad, Ahmed Ashry, Mohammad Tarek, Osama Saber, Ahmed Azazy, Badr Mohamed, Mohamed Hassan, Nashwa El-Khazragy, Sherif El-Khamisy

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