RNA preprints: W14/2018

Detecting Differential Variable microRNAs via Model-Based Clustering. Xuan Li, Yuejiao Fu, Xiaogang Wang, Dawn L DeMeo, Kelan Tantisira, Scott T. Weiss, Weiliang Qiu

SPORTS1.0: a tool for annotating and profiling non-coding RNAs optimized for rRNA- and tRNA- derived small RNAs. Junchao Shi, Euna Ko, Kenton M Sanders, Qi Chen, Tong Zhou

Muscleblind regulates Drosophila Dscam2 cell-type-specific alternative splicing. Joshua Shing Shun Li, Kevin Nzumbi Mutemi, S Sean Millard

The Evolution of Small-RNA-Mediated Silencing of an Invading Transposable Element. Erin S. Kelleher, Ricardo B. R. Azevedo, Yichen Zheng

Isolation and sequencing of AGO-bound RNAs reveals characteristics of mammalian stem-loop processing in vivo. Ian M Silverman, Sager J Gosai, Nicholas Vrettos, Shawn W Foley, Nathan D Berkowitz, Zissimos Mourelatos, Brian D Gregory

The trypanocidal benzoxaborole AN7973 inhibits trypanosome mRNA processing. Daniela Begolo, Isabel M Vincent, Federica Giordani, Michael J Witty, Timothy G Rowan, Zakaria Bengaly, Kirsten Gillingwater, Yvonne Freund, Michael P Barrett, Christine E Clayton

Small RNA-mediated genomic silencing promotes telomere stability in the absence of telomerase. Charles Longtine, Stephen Frenk, Shawn Ahmed

Global changes in mRNA abundance drive differential shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription. Sarah Gilbertson, Joel D Federspiel, Ella Hartenian, Ileana M Cristea, Britt Glaunsinger

Intron-containing RNA from the HIV-1 provirus activates type I interferon and inflammatory cytokines. Sean Matthew McCauley, Kyusik Kim, Anetta Nowosielska, Ann Dauphin, William Edward Diehl, Jeremy Luban

Genome variants associated with RNA splicing variation in bovine are extensively shared between tissues. Ruidong Xiang, Ben J. Hayes, Christy J. Vander Jagt, Iona M. MacLeod, Majid Khansefid, Phil J. Bowman, Zehu Yuan, Claire P. Prowse-Wilkins, Coralie M. Reich, Brett A. Mason, Josie B. Garner, Leah C. Marett, Yizhou Chen, Sunduimijid Bolormaa, Hans D. Daetwyler, Amanda J. Chamberlain, Michael E. Goddard

Robustness of bristle number to temperature and genetic background varies with bristle type and is regulated by miR-9a. Alexis Matamoro-Vidal, Thomas Tully, Virginie Courtier-Orgogozo

Deciphering human ribonucleoprotein regulatory networks. Neelanjan Mukherjee, Hans-Hermann Wessels, Svetlana Lebedeva, Marcin Sajek, Thalia Farazi, Mahsa Ghanbari, Aitor Garzia, Alina Munteanu, Aleksandra Mihailovic, Jessica Spitzer, Kemal Akat, Thomas Tuschl, Uwe Ohler

Evidence for a potential role of miR-1908-5p and miR-3614-5p in autoimmune disease risk using genome-wide analyses. Inken Wohlers, Lars Bertram, Christina Lill

Mettl14 is required for mouse post-implantation development by facilitating epiblast maturation. Qing-Yuan Sun, Tie Gang Meng, Xukun Lu, Lei Guo, Guan Mei Hou, Qian Nan Li, Xue Shan Ma, Lin Huang, Li Hua Fan, Zheng Hui Zhao, Xiang Hong Ou, Ying Chun Ouyang, Heide Schatten, Lei Li, Zhen Bo Wang

PinMol: Python application for designing molecular beacons for live cell imaging of endogenous mRNAs. Livia V. Bayer, Omar S. Omar, Diana P. Bratu, Irina E. Catrina

Stability of local secondary structure determines selectivity of viral RNA chaperones. Jack P.K. Bravo, Alexander Borodavka, Anders Barth, Antonio N Calabrese, Peter Mojzes, Joseph J.B. Cockburn, Don C Lamb, Roman Tuma

A Nested 2-Level Cross-validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces cerevisae. Antoine Soule, Jean-Marc Steyaert, Jerome Waldispuhl

Sequential regulation of maternal mRNAs through a conserved cis-acting element in their 3’ UTRs. Pooja Flora, Siu Wah Wong-Deyrup, Elliot Martin, Ryan Palumbo, Mohamad Nasrallah, Andrew Oligney, Patrick Blatt, Dhruv Patel, Gabriele Fuchs, Prashanth Rangan

Knockdown of GAS5 restores ox-LDL-induced impaired autophagy flux via upregulating miR-26a in human endothelial cells. Weijie Liang, Taibing Fan, Lin Liu, Lianzhong Zhang

The cellular NMD pathway restricts Zika virus infection and is targeted by the viral capsid protein. Krystal A Fontaine, Kristoffer E Leon, Mir Mubashir Khalid, David Jimenez-Morales, Mariah Dunlap, Julia A Kaye, Priya S Shah, Steven Finkbeiner, Nevan J Krogan, Melanie Ott

Identification of microRNA clusters cooperatively acting on Epithelial to Mesenchymal Transition in Triple Negative Breast Cancer. Laura Cantini, Gloria Bertoli, Claudia Cava, Thierry Dubois, Andrei Zinovyev, Michele Caselle, Isabella Castiglioni, Emmanuel Barillot, Loredana Martignetti

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