RNA preprints: W15/2018

Long non-coding RNAs in wild wheat progenitors. Alice Pieri, Mario Enrico Pè, Edoardo Bertolini

MicroRNA-205 affects mouse granulosa cell apoptosis and estradiol synthesis by targeting CREB1. Zhang Pengju, Wang Jun, Lang Hongyan, Wang Weixia, Liu Xiaohui, Liu Haiyan, Tan Chengcheng, Li Xintao, Zhao Yumin, Wu Xinghong

Co-regulation of alternative splicing by hnRNPM and ESRP1 during EMT. Samuel Harvey, Yilin Xu, Xiaodan Lin, Xin D Gao, Yushan Qiu, Jaegyoon Ahn, Xinshu Xiao, Chonghui Cheng

Phase Separations Driven by RNA Scaffolds and Protein Sequestration in FXTAS. Teresa Botta-Orfila, Fernando Cid-Samper, Iona Gelabert-Baldrich, Benjamin Lang, Nieves Lorenzo-Gotor, Riccardo Delli Ponti, Lies-Anne WFM Severijnen, Benedetta Bolognesi, Ellen Gelpi, Renate K. Hukema-Felten, Gian Gaetano Tartaglia

Circular RNA expression in human hematopoietic cells is widespread and cell-type specific. Benoit P Nicolet, Sander Engels, Francesca Aglialoro, Emile van den Akker, Marieke M von Lindern, Monika C Wolkers

Translation elongation and mRNA stability are coupled through the ribosomal A-site. Gavin Hanson, Najwa Alhusaini, Nathan Morris, Thomas Sweet, Jeff Coller

RNAs as proximity labeling media for identifying nuclear speckle positions relative to the genome. Weizhong Chen, Zhangming Yan, Simin Li, Norman Huang, Xuerui Huang, Jin Zhang, Sheng Zhong

Predicting the Impact of cis-Regulatory Variation on Alternative Polyadenylation. Nicholas Bogard, Johannes Linder, Alexander B Rosenberg, Georg Seelig

A transmissible RNA pathway in honey bees. Eyal Maori, Yael Garbian, Vered Kunik, Rita Mozes-Koch, Osnat Malka, Haim Kalev, Niv Sabath, Ilan Sela, Sharoni Shafir

A planarian nidovirus expands the limits of RNA genome size. Amir Saberi, Anastasia A. Gulyaeva, John Brubacher, Phillip A. Newmark, Alexander Gorbalenya

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data. Kasper S. Skytte Andersen, Rasmus H. Kirkegaard, Soeren M. Karst, Mads Albertsen

CUDA RNAfold. W B Langdon, Ronny Lorenz

Hippocampal knockdown of Piwil1 and Piwil2 enhances contextual fear memory in mice. Laura Jane Leighton, Wei Wei, Vikram S Ratnu, Xiang Li, Esmi L Zajaczkowski, Paola A Spadaro, Nitin Khandelwal, Arvind Kumar, Timothy W Bredy

MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network with PRC2. Haridha Shivram, Steven V Le, Vishwanath R Iyer

Identification of PTBP1 responsible for caspase dependent YRNA cleavage. Jun Ogata, Yuki Sugiura, Akinori Kanai, Masafumi Tanaka, Hirotaka Matsui, Masato Ohtsuka, Toshiya Inaba, Motoyuki Otsuka, Ai Kotani

The Translation Machinery Is Immune from miRNA Perturbations: A Cell-Based Probabilistic Approach. Shelly Mahlab-Aviv, Nathan Linial, Michal Linial

Heteromeric RNP assembly at LINEs controls lineage-specific RNA processing. Jan Attig, Federico Agostini, Clare Gooding, Aarti Singh, Anob M Chakrabarti, Nejc Haberman, Warren Emmett, Christopher WJ Smith, Nicholas M Luscombe, Jernej Ule

Key role of piRNAs in telomeric chromatin maintenance and telomere nuclear positioning in Drosophila germline. Elizaveta Radion, Valeriya Morgunova, Sergei Ryazansky, Natalia Akulenko, Sergey Lavrov, Yuri Abramov, Pavel Komarov, Sergey Glukhov, Ivan Olovnikov, Alla Kalmykova

Riboglow: a multicolor riboswitch-based platform for live cell imaging of mRNA and small non-coding RNA in mammalian cells. Esther Braselmann, Aleksandra J Wierzba, Jacob T Polaski, Mikolaj Chrominski, Zachariah Holmes, Sheng-Ting Hung, Dilara Batan, Joshua Wheeler, Roy Parker, Ralph Jimenez, Dorota Gryko, Robert T. T Batey, Amy E Palmer

Taxonomy annotation and guide tree errors in 16S rRNA databases. Robert C Edgar

Specific miRNA-GPCR networks regulate Sox9a/Sox9b activities to promote gonadal renewal in zebrafish. Jizhou Yan, Xinlu Du, Huiping Guo, Ying Zhang, Jiacheng Wu, Mingyou Li, Xianxin Hua

Polypyrimidine Tract Binding Protein blocks microRNA-124 biogenesis to enforce its neuronal specific expression. Kyu-Hyeon Yeom, Simon Mitchell, Anthony J Linares, Sika Zheng, Chia-Ho Lin, Xiao-Jun Wang, Alexander Hoffmann, Douglas L Black

Uncoupling DNA- and RNA-directed DNA methylation at Rasgrf1. Erin T. Chu, David H. Taylor, Margaret Hofstedt, Paul D. Soloway

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