RNA preprints: W16/2018

An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys. Marilyn Parra, Ben W. Booth, Richard Weiszmann, Brian A. Yee, Gene W. Yeo, James B. Brown, Susan E. Celniker, John G. Conboy

Prader-Willi locus Snord116 RNA processing requires an active endogenous allele and neuron-specific splicing by Rbfox3/NeuN. Rochelle L Coulson, Weston T Powell, Dag H Yasui, Gayathri Dileep, James Resnick, Janine M LaSalle

Changes in neuronal immunofluorescence in the C- versus N-terminal domains of hnRNP H following D1 dopamine receptor activation. Qiu T Ruan, Neema Yazdani, Jacob A Beierle, Kathryn M Hixson, Kristen E Hokenson, Daniel J Apicco, Kimberly Luttik, Karen Zheng, Peter EA Ash, Karen Szumlinski, Shelley Russek, Benjamin Wolozin, Camron D Bryant

Impact of DNA sequencing and analysis methods on 16S rRNA gene bacterial community analysis in dairy products. Zhengyao Xue, Mary E Kable, Maria L Marco

Characterisation and functional predictions of canine long non-coding RNAs. Céline Le Béguec, Valentin Wucher, Laetitia Lagoutte, Edouard Cadieu, Nadine Botherel, Benoit Hédan, Clotilde De Brito, Anne-Sophie Guillory, Catherine André, Thomas Derrien, Christophe Hitte

In silico analysis of piRNAs in retina reveals potential targets in intracellular transport and retinal degeneration. Suganya Sivagurunathan, Nagesh Srikakulam, Jayamuruga Pandian Arunachalam, Gopal Pandi, Subbulakshmi Chidambaram

No evidence of functional co-adaptation between clustered microRNAs. Antonio Marco

Widespread cis-regulation of RNA-editing in a large mammal. Thomas J Lopdell, Christine Couldrey, Kathryn Tiplady, Stephan R Davis, Russell G Snell, Bevin L Harris, Mathew D Littlejohn

Automated analysis of small RNA datasets with RAPID. Sivarajan Karunanithi, Martin Simon, Marcel H Schulz

Gene Set Enrichment Analysis (GSEA) of Upregulated Genes in Cocaine Addiction Reveals miRNAs as Potential Therapeutic Agents. Ishtiaque Ahammad, Sarbojoy Saha

Systematic evaluation of isoform function in literature reports of alternative splicing. Shamsuddin Bhuiyan, Sophia Ly, Minh Phan, Brandon Huntington, Ellie Hogan, Chao Chun Liu, James Liu, Paul Pavlidis

Direct inference of base-pairing probabilities with neural networks improves RNA secondary structure prediction with pseudoknots. Manato Akiyama, Yasubumi Sakakibara, Kengo Sato

Identification of a secretion-enhancing cis regulatory targeting element (SECReTE) involved in mRNA localization and protein synthesis. Osnat Cohen-Zontag, Lisha Qiu Jin Lim, Dvir Dahary, Tsviya Olender, Yitzhak Pilpel, Jeffrey Gerst

A cytoplasmic Argonaute protein promotes the inheritance of RNAi. Fei Xu, Xuezhu Feng, Xiangyang Chen, Chenchun Weng, Qi Yan, Ting Xu, Minjie Hong, Shouhong Guang

Six species of non-tuberculosis mycobacteria carry non-identical 16S rRNA gene copies. Keita Takeda, Kinuyo Chikamatsu, Yuriko Igarashi, Yuta Morishige, Yoshiro Murase, Akio Aono, Hiroyuki Yamada, Akiko Takaki, Satoshi Mitarai

Poly-Target Selection Identifies RNA Broad-Spectrum Inhibitors of HIV Reverse Transcriptases. Khalid K. Alam, Jonathan L. Chang, Margaret J. Lange, Phuong D.M. Nguyen, Andrew W. Sawyer, Donald H. Burke

RNA binding and HEPN nuclease activation are decoupled in CRISPR-Cas13a. Akshay Tambe, Alexandra East-Seletsky, Gavin J Knott, Jennifer A Doudna, Mitchell R O’Connell

A method for RNA structure prediction shows evidence for structure in lncRNAs. Riccardo Delli Ponti, Alexandros Armaos, Stefanie Marti, Gian Gaetano Tartaglia



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