RNA preprints: W17/2018

U1 snRNP regulates chromatin retention of noncoding RNAs. Yafei Yin, Jinlong Yuyang Lu, Xuechun Zhang, Wen Shao, Yanhui Xu, Pan Li, Yantao Hong, Qiangfeng Cliff Zhang, Xiaohua Shen

Human 5′ UTR design and variant effect prediction from a massively parallel translation assay. Paul J Sample, Ban Wang, David W Reid, Vladimir Presnyak, Iain McFadyen, David R Morris, Georg Seelig

Helicase Promotes Replication Re-initiation from an RNA Transcript. Bo Sun, Anupam Singh, Shemaila Sultana, James Inman, Smita Patel, Michelle Wang

The conservation landscape of the human ribosomal RNA gene repeats. Saumya Agrawal, Austen R.D. Ganley

Buffering gene expression noise by microRNA based feedforward regulation. Pavol Bokes, Michal Hojcka, Abhyudai Singh

Circulating microRNA biomarkers for metastatic disease in neuroblastoma patients. Fjoralba Zeka, Alan Van Goethem, Katrien Vanderheyden, Fleur Demuynck, Tim Lammens, Anneleen Decock, Hetty H Helsmoortel, Joelle Vermeulen, Rosa Noguera, Ana P Berbegall, Valerie Combaret, Gudrun Schleiermacher, Genevieve Laureys, Alexander Schramm, Johannes H Schulte, Sven Rahmann, Julie Bienertova Vasku, Pavel Mazanek, Marta Jeison, Shifra Ash, Michael D Hogarty, Mirthala Moreno-Smith, Eveline Barbieri, Jason Shohet, Frank Berthold, Frank Speleman, Matthias Fischer, Katleen De Preter, Pieter Mestdagh, Jo Vandesompele

A speed-fidelity trade-off determines the mutation rate and virulence of an RNA virus. William Fitzsimmons, Robert J. Woods, John T. McCrone, Andrew Woodman, Jamie J. Arnold, Madhumita Yennawar, Richard Evans, Craig E. Cameron, Adam S. Lauring

Intron retention as a novel source of cancer neoantigens. Alicia C Smart, Claire A Margolis, Harold Pimentel, Meng Xiao He, Diana Miao, Dennis Adeegbe, Tim Fugmann, Kwok Kin Wong, Eliezer M Van Allen

The miR-96 and RAR&gamma signaling axis governs androgen signaling and prostate cancer progression. Mark D. Long, Prashant K. Singh, James R. Russell, Gerard Llimos, Spencer Rosario, Abbas Rizvi, Henry Withers, Patrick R. van den Berg, Jason Kirk, Lara E. Sucheston-Campbell, Dominic J. Smiraglia, Moray J. Campbell

TP53 Intron Derived Concentrations Implicate p53. Kevin G Bermeister, Jonathan Dyne, Xinghao Yu

ADAR2 mediated Q/R editing of GluK2 regulates homeostatic plasticity of kainate receptors. Sonam Gurung, Ashley J Evans, Kevin A Wilkinson, Jeremy Henley

Association Between Colonic Level of microRNA 31 and Subtypes of Adult and Pediatric Crohn’s Disease. Benjamin P Keith, Jasmine B Barrow, Nevzat Kazgan, Neil D Shah, Greg R Gipson, Wendy A Pitman, Shruti J Saxena, Elisabeth A Wolber, Matthew S Schaner, Michelle Hoffner O’Connor, Omar K Tradd, Matthew Kanke, Takahiko Toyonaga, Nicole Chaumont, Timothy S Sadiq, Mark J Koruda, Paul A Cotney, Nancy Allbritton, Dimitri G Trembath, Francisco Sylvester, Terrence S Furey, Praveen Sethupathy, Shehzad Z Sheikh

Transgenerational sterility of Piwi pathway mutants in response to germ granule dysfunction. Katherine Kretovich Billmyre, Bree Heestand, Maya Spichal, Stephen Frenk, Shawn Ahmed

Expanding the size limit of RNA viruses: Evidence of a novel divergent nidovirus in California sea hare, with a ~35.9 kb virus genome. Humberto J Debat

Genetic analysis of RNA polymerase I unveils new role of the Rpa12 subunit during transcription. Tommy Darrière, Michael Pilsl, Adrien Chauvier, Titouan Genty, Sylvain Audibert, Christophe Dez, Isabelle Leger-Silvestre, Christophe Normand, Olga Calvo, Carlos Fernández-Tornero, Herbert Tschochner, Olivier Gadal

Transcription Factor Regulation of RNA polymerase’s Torsional Capacity. Jie Ma, Chuang Tan, Xiang Gao, Robert Fulbright, Jeffery Roberts, Michelle D. Wang

A Single Mechanism of Biogenesis, Initiated and Directed by PIWI Proteins, Explains piRNA Production in Most Animals. Phillip Zamore, Ildar Gainetdinov, Cansu Colpan, Katharine Cecchini

Gene Set Enrichment Analysis (GSEA) of Upregulated Genes in Cocaine Addiction Reveals miRNAs as Potential Therapeutic Agents. Ishtiaque Ahammad

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