RNA preprints: W18/2018

Adaptive Partitioning of the tRNA Interaction Interface by Aminoacyl-tRNA-Synthetases. Andy Collins-Hed, David H Ardell

The suppressive cap-binding-complex factor 4EIP is required for normal differentiation. Christine Clayton, Monica Terrao, Kevin Kamanyi Marucha, Elisha Mugo, Dorothea Droll, Ihor Minia, Franziska Egler, Johanna Braun

Promoter activity buffering reduces the fitness cost of misregulation. Miquel Angel Schikora-Tamarit, Guillem Lopez-Grado i Salinas, Carolina Gonzalez Navasa, Irene Calderon, Xavi Marcos-Fa, Miquel Sas, Lucas Carey

Direct reprogramming of human epithelial cells into organoids by miR-106a-3p. Frederic Delom, Michel Puceat, Delphine Fessart

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses. Stephen Woloszynek, Zhengqiao Zhao, Jian Chen, Gail L. Rosen

A single N1-methyladenosine on the large ribosomal subunit rRNA impacts locally its structure and the translation of key metabolic enzymes. Sunny Sharma, Johannes David Hartmann, Peter Watzinger, Arvid Klepper, Christian Peifer, Peter Koetter, Denis LJ Lafontaine, Karl-Dieter Entian

Structural basis for the RNA-guided ribonuclease activity of CRISPR-Cas13d. Cheng Zhang, Silvana Konermann, Nicholas J Brideau, Peter Lotfy, Scott J Novick, Timothy Strutzenberg, Patrick R Griffin, Patrick D Hsu, Dmitry Lyumkis

Response to “No evidence of functional co-adaptation between clustered microRNAs”. Yirong Wang, Hong Zhang, Jian Lu

A Rev-CBP80-eIF4AI complex drives Gag synthesis from the HIV-1 unspliced mRNA. Daniela Toro-Ascuy, Bárbara Rojas-Araya, Francisco García-de-Gracia, Cecilia Rojas-Fuentes, Camila Pereira-Montecinos, Aracelly Gaete-Argel, Fernando Valiente-Echeverría, Théophile Ohlmann, Ricardo Soto-Rifo

Misoprostol regulates Bnip3 repression and alternative splicing to control cellular calcium homeostasis during hypoxic stress. Jared T. Field, Matthew D. Martens, Wajihah Mughal, Yan Hai, Donald Chapman, Grant M. Hatch, Tammy L. Ivanco, William Diehl-Jones, Joseph W. Gordon

CRISPR-Cas blocks antibiotic resistance plasmid transfer between Enterococcus faecalis strains in the gastrointestinal tract. Valerie J Price, Sara W McBride, Breck Duerkop, Kelli L Palmer

DDX41 recognizes RNA/DNA retroviral reverse transcripts and is critical for in vivo control of MLV infection. Spyridon Stavrou, Alexya Aguilera, Kristin Blouch, Susan R Ross

Structural basis for transfer RNA mimicry by a bacterial Y RNA. Wei Wang, Xinguo Chen, Sandra L Wolin, Yong Xiong

The spatial and temporal dynamics of the nuclear RNAi-targeted RNA transcripts in Caenorhabditis elegans. Julie Zhouli Ni, Natallia Kalinava, Sofia Galindo Mendoza, Sam Guoping Gu

Negative Cooperativity between Gemin2 and RNA Determines RNA Selection and Release of the SMN Complex in snRNP Assembly. Hongfei Yi, Li Mu, Congcong Shen, Xi Kong, Yingzhi Wang, Yan Hou, Rundong Zhang

MECP2 duplication and mutations impair NSCs differentiation via miR-197 regulated ADAM10. Yumeng Wang, Yufang Zheng, Siyu Yang, Zhangmin Yang, Lin-na Zhang, Yan-qin He, Xiaohong Gong, Dong Liu, Richard H Finnell, Zilong Qiu, Yasong Du, Hongyan Wang

Enhancer control of miR-155 expression in Epstein-Barr virus infected B cells. C David Wood, Thomas Carvell, Andrea Gunnell, Opeoluwa O Ojeniyi, Cameron S Osborne, Michelle J West

M1A within cytoplasmic mRNAs at single nucleotide resolution: A reconciled transcriptome-wide map. Schraga Schwartz

A systematic survey of human tissue-specific gene expression and splicing reveals new opportunities for therapeutic target identification and evaluation. Robert Y Yang, Jie Quan, Reza Sodaie, Francois Aguet, Ayellet V Segre, John A Allen, Thomas A Lanz, Veronica Reinhart, Matthew Crawford, Samuel Hasson, GTEx Consortium, Kristin G Ardlie, Roderic Guigo, Hualin S Xi

Small RNAs gained during epididymal transit of sperm are essential for embryonic development in mice. Colin Conine, Fengyun Sun, Lina Song, Jaime Rivera-Perez, Oliver Rando

Efficient computation of co-transcriptional RNA-ligand interaction dynamics. Michael T Wolfinger, Christoph Flamm, Ivo L Hofacker

Evidence of an Unusual Poly(A) RNA Signature Detected by High-throughput Chemical Mapping. Roger Wellington-Oguri, Eli Fisker, Michelle Wiley, Mat Zada, Eterna Players

Identification of small regulatory RNAs involved in persister formation. Shanshan Zhang, Shuang Liu, Nan Wu, Wenhong Zhang, Ying Zhang

Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation. Qili Fei, Yu Yu, Li Liu, Yu Zhang, Patricia Baldrich, Qing Dai, Xuemei Chen, Blake Meyers

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