RNA preprints: W19/2018

A new full-length virus genome sequencing method reveals that antiviral RNAi changes geminivirus populations in field-grown cassava. Devang Mehta, Matthias Hirsch-Hoffmann, Mariam Were, Andrea Patrignani, Hassan Were, Wilhelm Gruissem, Hervé Vanderschuren

RsmV a small non-coding regulatory RNA in Pseudomonas aeruginosa that sequesters RsmA and RsmF from target mRNAs. Kayley H Janssen, Manisha Diaz, Cindy J Gode, Matthew C Wolfgang, Timothy L Yahr

Exponential fluorescent amplification of individual RNAs using clampFISH probes. Sara H Rouhanifard, Ian A Mellis, Margaret Dunagin, Sareh Bayatpour, Orsolya Symmons, Allison Cote, Arjun Raj

Decoupling the impact of microRNAs on translational repression versus RNA degradation in embryonic stem cells. Jacob Freimer, TJ Hu, Robert Blelloch

RNA polymerase II clustering through CTD phase separation. Marc Boehning, Claire Dugast-Darzacq, Marija Rankovic, Anders S Hansen, Tae-Kyung Yu, Herve Marie-Nelly, Goran Kokic, Gina M Dailey, Patrick Cramer, Xavier Darzacq, Markus Zweckstetter

CSB-dependent CDK9 degradation and RNA Polymerase II phosphorylation during Transcription Coupled Repair. Lise-Marie Donnio, Anna Lagarou, Gabrielle Sueur, Pierre-Olivier MARI, Giuseppina Giglia-Mari

MiRNA expression profiles of serum exosomes derived from individuals with latent and active tuberculosis. Lingna Lyu, Jinghui Wang, Hong-yan Jia, Liping Pan, Zi-hui Li, Feng-jiao Du, Bo-ping Du, Qi Sun, Zong-de Zhang

S phase R-loop formation is restricted by PrimPol-mediated repriming. Saša Šviković, Alastair Crisp, Sue Mei Tan-Wong, Thomas A. Guilliam, Aidan J. Doherty, Nick J Proudfoot, Guillaume Guilbaud, Julian E. Sale

Binding specificities of human RNA binding proteins towards structured and linear RNA sequences. Arttu Jolma, Jilin Zhang, Estefania Mondragón, Teemu Kivioja, Yimeng Yin, Fangjie Zhu, Quaid Morris, Timothy R. Hughes, L. James Maher III, Jussi Taipale

Co-transcriptional loading of RNA export factors shapes the human transcriptome. Nicolas Viphakone, Ian M Sudbery, Catherine Heath, David Sims, Stuart A Wilson

The variations of human miRNAs and Ising like base pairing models. Jyoti Prasad Banerjee, Jayanta Kumar Das, Pabitra Pal Choudhury, Sayak Mukherjee, Sk. Sarif Hassan, Pallab Basu

MiR-29b-1-5p is altered in BRCA1 mutant tumours and is a biomarker in basal- like breast cancer. Michael Milevskiy, Gurveen Sandhu, Anna Wronski, Darren Korbie, Brooke Brewster, Annette Shewan, Stacey Edwards, Juliet French, Melissa Brown

Production of spliced long noncoding RNAs specifies regions with increased enhancer activity. Noa Gil, Igor Ulitsky

Pathogenic DDX3X mutations impair RNA metabolism and neurogenesis during fetal cortical development. Ashley L. Lennox, Ruiji Jiang, Lindsey Suit, Brieana Fregeau, Charles J. Sheehan, Kimberly A. Aldinger, Ching Moey, Iryna Lobach, Ghayda Mirzaa, Alexandra Afenjar, Dusica Babovic-Vuksanovic, Stéphane Bézieau, Patrick R. Blackburn, Jens Bunt, Lydie Burglen, Perrine Charles, Brian H.Y. Chung, Benjamin Cogné, Suzanne DeBrosse, Nataliya Di Donato, Laurence Faivre, Delphine Héron, A. Micheil Innes, Bertrand Isidor, Bethany L. Johnson-Kerner, Boris Keren, Amy Kimball, Eric W. Klee, Paul Kuentz, Sébastien Küry, Dominique Martin-Coignard, Cyril Mignot, Noriko Miyake, Caroline Nava, Mathilde Nizon, Diana Rodriguez, Lot Snijders Blok, Christel Thauvin, Julien Thevenon, Marie Vincent, Alban Ziegler, William Dobyns, Linda J. Richards, A. James Barkovich, Stephen N. Floor, Debra L. Silver, Elliott H. Sherr

Neutrophil microvesicles drive atherosclerosis by delivering miR-155 to atheroprone endothelium. Ingrid Gomez, Ben Ward, Celine Souilhol, Chiara Recarti, Mark Ariaans, Jessica Johnston, Amanda Burnett, Marwa Mahmoud, Le Anh Luong, Laura West, Merete Long, Sion Parry, Rachel Woods, Carl Hulston, Birke Benedikter, Rohit Bazaz, Sheila Francis, Endre Kiss-Toth, Marc van Zandvoort, Andreas Schober, Paul Hellewell, Paul Evans, Victoria Ridger

Dlk1-Dio3 Locus-Derived LncRNAs Perpetuate Postmitotic Motor Neuron Cell Fate and Subtype Identity. Ya-Ping Yen, Wen-Fu Hsieh, Ya-Lin Lu, Ee Shan Liau, Ho-Chiang Hsu, Yen-Chung Chen, Ting-Chun Liu, Mien Chang, Joye Li, Shau-Ping Lin, Jui-Hung Hung, Jun-An Chen

DOT1L suppresses nuclear RNAi originating from enhancer elements in Caenorhabditis elegans. Ruben Esse, Ekaterina Gushchanskaia, Avery Lord, Alla Grishok

The interplay between small RNA pathways shapes chromatin landscape in C. elegans. Ekaterina Gushchanskaia, Ruben Esse, Qicheng Ma, Nelson Lau, Alla Grishok

RNA polymerase organizes into distinct spatial clusters independent of ribosomal RNA transcription in E. coli. Xiaoli Weng, Christopher Herrick Bohrer, Kelsey Bettridge, Arvin Cesar Lagda, Cedric Cagliero, Ding Jun Jin, Jie Xiao

Large-scale RNA editing profiling in different adult chicken tissues. Mohammad Reza Bakhtiarizadeh, Hamid Shafiei, Abdolreza Salehi

 

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