RNA preprints: W22/2018

Single-molecule imaging of mRNA localization and regulation during the integrated stress response. Johannes H Wilbertz, Franka Voigt, Ivana Horvathova, Gregory Roth, Yinxiu Zhan, Jeffrey Alan Chao

In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation. Chi-Chih Wu, Axel Klaesson, Julia Buskas, Petter Ranefall, Reza Mirzazadeh, Ola Söderberg, Jochen B. W. Wolf

Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. Denise Anna Thiel, Nataša Djurdjevac Conrad, Ria X Peschutter, Heike Siebert, Annalisa Marsico

UPA-Seq: Prediction of Functional LncRNAs Using Differential Sensitivity to UV Crosslinking. Taiwa Komatsu, Mari Mito, Koichi Fujii, Shintaro Iwasaki, Shinichi Nakagawa

Imaging of single mRNA translation repression reveals diverse interactions with mRNP granules. Stephanie L Moon, Tatsuya Morisaki, Anthony Khong, Kenneth Lyon, Roy Parker, Timothy J Stasevich

Coarse-grained modeling for structure, stability and flexibility of double stranded RNAs in salt solutions. Lei Jin, Ya-Zhou Shi, Chen-Jie Feng, Ya-Lan Tan

Unbiased dynamic characterization of RNA-protein interactions by OOPS. Rayner M. L. Queiroz, Tom Smith, Eneko Villanueva, Mie Monti, Mariavittoria Pizzinga, Maria Marti-Solano, Dan-Mircea Mirea, Manasa Ramakrishna, Robert F. Harvey, Veronica Dezi, Sven Degroeve, Lennart Martens, Gavin H. Thomas, Anne E. Willis, Kathryn S. Lilley

Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network. Andrew Dhawan, Adrian L. Harris, Francesca M Buffa, Jacob G Scott

The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest. Jakob Trendel, Thomas Schwarzl, Ananth Prakash, Alex Bateman, Matthias W Hentze, Jeroen Krijgsveld

De novo computational RNA modeling into cryoEM maps of large ribonucleoprotein complexes. Kalli Kappel, Shiheng Liu, Kevin P. Larsen, Georgios Skiniotis, Elisabetta Viani Puglisi, Joseph D. Puglisi, Z. Hong Zhou, Rui Zhao, Rhiju Das

Characterization and identification of long non-coding RNAs based on feature relationship. Guangyu Wang, Hongyan Yin, Boyang Li, Chunlei Yu, Fan Wang, Xingjian Xu, Jiabao Cao, Yiming Bao, Liguo Wang, Amir Abbasi, Vladimir Bajic, Lina Ma, Zhang Zhang

Purification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction. Erika C Urdaneta, Carlos H Vieira-Vieira, Timon Hick, Hans-Herrmann Wessels, Davide Figini, Rebecca Moschall, Jan Medenbach, Uwe Ohler, Sander Granneman, Matthias Selbach, Benedikt M Beckmann

Autonomous functionality of an upstream open reading frame in polycistronic mammalian mRNAs. Shohei Kitano, Gabriel Pratt, Keizo Takao, Yasunori Aizawa

Detection of cellular microRNAs with programmable DNA nanoswitches. Arun Richard Chandrasekaran, Molly MacIsaac, Paromita Dey, Oksana Levchenko, Lifeng Zhou, Madeline Andres, Bijan K Dey, Ken Halvorsen

xMD-miRNA-seq to generate near in vivo miRNA expression estimates in colon epithelial cells. Avi Z Rosenberg, Carrie Wright, Karen Fox-Talbot, Anandita Rajpurohit, Courtney Williams, Corey Porter, Olga Kovbasnjuk, Matthew N McCall, Joo Heon Shin, Marc K. Halushka

Novel RNA aptamers targeting gastrointestinal cancer biomarkers CEA, CA50 and CA72-4 with superior affinity and specificity. Qing Pan, Carmen O.K. Law, Mingo M.H. Yung, K.C. Han, Yuen Lam Pon, Terrence chi kong Lau

Prioritizing bona fide bacterial small RNAs with machine learning classifiers. Erik JJ Eppenhof, Lourdes Peña-Castillo​

 

Advertisements

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s