RNA preprints: W23/2018

Yeast PAF1 complex restricts the accumulation of RNA polymerase III and counters the replication stress on the transcribed genes. Pratibha Bhalla, Dipti Vinayak Vernekar, Ashutosh Shukla, Benoit Gilquin, Yohnn Coute, Purnima Bhargava

AQ-seq: Accurate quantification of microRNAs and their variants. Haedong Kim, Jimi Kim, Kijun Kim, Hyeshik Chang, Kwontae You, V. Narry Kim

Dynamics and spatial genomics of the nascent transcriptome in single mESCs by intron seqFISH. Sheel Shah, Yodai Takei, Wen Zhou, Eric Lubeck, Jina Yun, Noushin Koulena, Eric J. Liaw, Mina Amin, Long Cai

A long-non-coding RNA, LINC00473, confers the human adipose tissue thermogenic phenotype through enhanced cAMP responsiveness. Khanh-Van Tran, Cecilie Nandrup-Bus, Tiffany DeSouza, Ricardo Soares, Naja Zenius Jespersen, So Yun Min, Raziel Rojas-Rodriguez, Hanni Willenbrock, Therese Juhlin, Mai Charlotte Krogh Severinsen, Kimberly Malka, Bente Klarlund Pedersen, Timothy Fitzgibbons, Camilla Scheele, Silvia Corvera, Soeren Nielsen

Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction. Vu Viet Hoang Pham, Junpeng Zhang, Lin Liu, Buu Minh Thanh Truong, Taosheng Xu, Trung Tin Nguyen, Jiuyong Li, Thuc Duy Le

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix. Joseph David Yesselman, Sarah K Denny, Namita Bisaria, Daniel Herschlag, William J Greenleaf, Rhiju Das

Tristetraprolin/ZFP36 regulates the turnover of autoimmune-associated HLA-DQ mRNAs. Laura Pisapia, Russell Hamilton, Vito D’Agostino, Pasquale Barba, Maria Strazzullo, Alessandro Provenzani, Carmela Gianfrani, Giovanna Del Pozzo

Functional lability of RNA-dependent RNA polymerases in animals. Natalia Pinzón, Stéphanie Bertrand, Lucie Subirana, Isabelle Busseau, Hector Escrivá, Hervé Seitz

Pan-cancer analysis of RNA binding proteins (RBPs) reveals the involvement of the core pre-mRNA splicing and translation machinery in tumorigenesis. Bin Zhang, Kamesh Rajendra Babu, Chun You Lim, Zhi Hao Kwok, Jia Li, Siqin Zhou, Henry Yang, Yvonne Tay

Staphylococcus aureus Cas9 is a multiple-turnover enzyme. Paul Yourik, Ryan T Fuchs, Megumu Mabuchi, Jennifer L Curcuru, G. Brett Robb

Influence of miR-520e-mediated MAPK signaling pathway on HBV replication and regulation of hepatocellular carcinoma cells via targeting EphA2. Jing-hui Tian, Wen-dong Liu, Zhi-yong Zhang, Li-hua Tang, Dong Li, Zhao-ju Tian, Shao-wei Lin, Ying-jie Li

RNA Binding Motif Protein 48 is required for U12 splicing and maize endosperm differentiation. Fang Bai, Jacob Corll, Donya Shodja, Ruth Davenport, Guanqiao Feng, Janaki Mudunkothge, Christian J Brigolin, Federico Martin, Gertraud Spielbauer, Chi-Wah Tseung, Amy E Seibert, W. Brad Barbazuk, Shailesh Lal, A. Mark Settles

miR17~92 is essential for the survival of hematopoietic stem and progenitor cells by restraining pro-apoptotic BIM. Kerstin Brinkmann, Craig Hyland, Carolyn A de Graaf, Andreas Strasser, Warren S Alexander, Marco J Herold

Stem-loops direct precise processing of 3′ UTR-derived small RNA MicL. Taylor B. Updegrove, Andrew B Kouse, Katarzyna J Bandyra, Gisela Storz

Role of DCP1-DCP2 complex regulated by viral and host microRNAs in DNA virus infection. Yuechao Sun, Xiaobo Zhang

Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis. Saeideh Ebrahimkhani, Fatemeh Vafaee, Susannah Hallal, Heng Wei, Maggie Lee, Paul Young, Laveniya Satgunaseelan, Brindha Shivalingam, Catherine Suter, Michael Buckland, Kimberley Kaufman

Contrasting effects of aging on the expression of transposons, the piRNA machinery and mitochondrial transcripts in the Drosophila ovary. Alexandra A. Erwin, Justin P. Blumenstiel

A Novel Compound, ML336, Inhibits VEEV Replication by Interfering with Viral RNA Synthesis. Andrew M Skidmore, Robert S Adcock, Jasper Lee, Colleen Jonsson, Jennifer E Golden, Dong-Hoon Chung

Codon usage influences fitness through RNA toxicity. Pragya Mittal, James Brindle, Julie Stephen, Joshua B Plotkin, Grzegorz Kudla

The rainbow-spectrum of RNA secondary structures. Thomas J. X. Li, Christian M. Reidys



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