RNA preprints: W25/2018

Colonic Epithelial miR-31 Associates with the Development of Crohn’s Phenotypes. Benjamin P Keith, Jasmine B Barrow, Nevzat Kazgan, Neil D Shah, Greg R Gipson, Wendy A Pitman, Shruti J Saxena, Elisabeth A Wolber, Matthew S Schaner, Michelle Hoffner O’Connor, Omar K Tradd, Matthew Kanke, Takahiko Toyonaga, Nicole Chaumont, Timothy S Sadiq, Mark J Koruda, Paul A Cotney, Nancy Allbritton, Dimitri G Trembath, Francisco Sylvester, Terrence S Furey, Praveen Sethupathy, Shehzad Z Sheikh

Plasmodium male gametocyte development and transmission are critically regulated by general and transmission-specific members of the CAF1/CCR4/NOT complexKevin J. HartJenna OberstallerMichael P. WalkerAllen M. MinnsMark F. KennedyIan PadykulaJohnAdamsScott E. Lindner

Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing. Julia R WidomYuri A NedialkovVictoria RaiRyan HayesCharles L Brooks IIIIrina ArtsimovitchNils GWalter

Transcription initiation defines kinetoplast RNA boundaries. Francois M. Sement, Takuma Suematsu, Liye Liye Zhang, Tian Yu, Lan Huang, Inna Aphasizheva, Ruslan Aphasizhev

A new cancer-testis long noncoding RNA, the OTP-AS1 RNA. Iulia K. Karnaukhova, Dmitri E. Polev, Larisa L. Krukovskaya, Alexei E. Masharsky, Olga V. Nazarenko, Andrei A. Makashov, Andrei P. Kozlov

Single-cell level transcriptome of the maize pathogenic fungi cochliobolus heterostrophus race O in infection reveal the virulence related genes, and potential circRNA effector. Jie Chen, meng wang, shaoqing wang, jianan sun, yaqian li, kai dou, zhixiang lu

Two-step binding kinetics of tRNAGly by the glyQS T-box riboswitch and its regulation by T-box structural elements. Jiacheng Zhang, Bhaskar Chetnani, Eric D. Cormack, Wei Liu, Alfonso Mondragon, Jingyi Fei

Developmental genetics of corolla tube formation: role of the tasiRNA-ARF pathway. Baoqing Ding, Rui Xia, Qiaoshan Lin, Vandana Gurung, Janelle M. Sagawa, Lauren E. Stanley, Matthew Strobel, Pamela K. Diggle, Blake C. Meyers, Yao-Wu Yuan

Understanding RNP remodelling uncovers RBPs functionally required for viral replication. Manuel Garcia-Moreno, Marko Noerenberg, Shuai Ni, Aino I Jarvelin, Esther Gonzalez-Almela, Caroline Lenz, Marcel Bach-Pages, Victoria Cox, Rosario Avolio, Thomas Davis, Svenja Hester, Thibault JM Sohier, Bingnan Li, Miguel Angel Sanz, Luis Carrasco, Emiliano P Ricci, Vicent Pelechano, Bernd Fischer, Shabaz Mohammed, Alfredo Castello

Exploration of miRNA-mediated fertility regulation network of cytoplasmic male sterility during flower bud development in soybean. Xianlong Ding, Hao Zhang, Hui Ruan, Yanwei Li, Linfeng Chen, Tanliu Wang, Ling Jin, Xiaoqiang Li, Shouping Yang, Junyi Gai

Precise tuning of gene expression output levels in mammalian cells. Yale S. Michaels, Mike B Barnkob, Hector Barbosa, Toni A Baeumler, Mary K Thompson, Violaine Andre, Huw Colin-York, Marco Fritzsche, Uzi Gileadi, Hilary M Sheppard, David JHF Knapp, Thomas A Milne, Vincenzo Cerundolo, Tudor A Fulga

S-CAP extends clinical-grade pathogenicity prediction to genetic variants that affect RNA splicing. Karthik A. Jagadeesh, Joseph M. Paggi, James S. Ye, Peter D. Stenson, David N. Cooper, Jonathan A. Bernstein, Gill Bejerano

Xist lncRNA forms silencing granules that induce heterochromatin formation and repressive complexes recruitment by phase separation. Andrea Cerase, Alexandros Armaos, Fernando Cid-Samper, Phil Avner, Gian Gaetano Tartaglia

Ensemble Feature Selection and Meta-Analysis of Cancer miRNA Biomarkers. Alejandro Lopez-Rincon, Marlet Martinez-Archundia, Gustavo Ulises Martinez-Ruiz, Alberto Tond

Pan-cancer systematic identification of lncRNAs associated with cancer prognosis. Matthew Ung, Evelien Schaafsma, Daniel Mattox, George Wang, Chao Cheng

Cooption of antagonistic RNA-binding proteins establishes cell hierarchy in Drosophila neuro-developmental tumors. Sara Genovese, Raphael Clement, Cassandra Gaultier, Florence Besse, Karine Narbonne-Reveau, Fabrice Daian, Sophie Foppolo, Nuno Miguel Luis, Cédric Maurange

The mirtron miR-1010 functions in concert with its host gene SKIP to maintain synaptic homeostasis. Christopher Amourda, Timothy E Saunders

Chemically Accurate Relative Folding Stability of RNA Hairpins from Molecular Simulations. Louis G. Smith, Zhen Tan, Aleksandar Spasic, Debapratim Dutta, Leslie A. Salas-Estrada, Alan Grossfield, David Mathews

Cancer-associated mRNAs regulated by the Helix-Loop-Helix motif of human EIF3A. Marina Volegova, Jamie Cate

Transcriptome-wide profiling of mammalian spliceosome and branchpoints with iCLIP. Michael Briese, Nejc Haberman, Christopher Sibley, Anob Chakrabarti, Zhen Wang, Julian Konig, David Perera, Vihandha Wickramasinghe, Ashok Venkitaraman, Nicholas Luscombe, Christopher Smith, Tomaz Curk, Jernej Ule

Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR. Gemma Danks, Heloisa Galbiati, Martina Raasholm, Yamila N Torres Cleuren, Eivind Valen, Pavla Navratilova, Eric M Thompson

Brr2 is a splicing fidelity factor. Megan Mayerle, Christine Guthrie

Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight candidate host target genes associated with quantitative disease resistance. Mark Charles Derbyshire, Malick Mbengue, Marielle Barascud, Olivier Navaud, Sylvain Raffaele

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