RNA preprints: W26/2018

RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans. Chuanman Zhou, Xiaoyang Gao, Surong Hu, Wenjing Gan, Jing Xu, Yongchao C. Ma, Long MA

IFN-γ induces epithelial-to-mesenchymal transition of cancer cells via an unique microRNA processing. Jer-Tsong Hsieh, U-Ging Lo, Rey-Chen Pong, Diane Yang, Leah Gandee, Elizabeth Hernandez, Andrew Dang, Chun-Jung Lin, John Santoyo, Shi-Hong Ma Ma, Rajni Sonavane, Jun Huang, Shu-Fen Tseng, Loredana Moro, Arnaldo Augusto Arbini, Payal Kapur, Ganesh V Raj, Dalin He, Chih-Ho Lai, Ho Lin

Mediator is essential for small nuclear and nucleolar RNA transcription in yeast. Jason P Tourigny, Moustafa M Saleh, Gabriel E Zentner

The exon junction complex undergoes a compositional switch that alters mRNP structure and nonsense-mediated mRNA decay activity. Justin W Mabin, Lauren A Woodward, Robert Patton, Zhongxia Yi, Mengxuan Jia, Vicki Wysocki, Ralf Bundschuh, Guramrit Singh

Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers. Khalid K. Alam, Jonathan L. Chang, Margaret J. Lange, Phuong D.M. Nguyen, Andrew W. Sawyer, Donald H. Burke

Barnaba: Software for Analysis of Nucleic Acids Structures and Trajectories. Sandro Bottaro, Giovanni Bussi, Giovanni Pinamonti, Sabine Reisser, Wouter Boomsma, Kresten Lindorff-Larsen

Dynamic m6A methylation facilitates mRNA triaging to stress granules. Maximilian Anders, Irina Chelysheva, Ingrid Goebel, Timo Trenkner, Jun Zhou, Yuanhui Mao, Silvia Verzini, Shu-Bing Qian, Zoya Ignatova

Genome-wide mapping reveals conserved and diverged R-loop activities in the unusual genetic landscape of the African trypanosome genome. Emma Briggs, Graham Hamilton, Kathryn Crouch, Craig Lapsley, Richard McCulloch

The pyriproxyfen metabolite 4’OH- pyriproxyfen disrupts thyroid hormone signaling and enhances Musashi-1 levels in neuroprogenitors. Petra Spirhanzlova, Sebastien Le Mevel, Karn Wejaphikul, Bilal Mughal, Jean-David Gothie, Anthony Sebillot, Lucille Butruille, Michelle Leemans, Theo Visser, Sylvie Remaud, Jean-Baptiste Fini, Barbara Demeneix

IRES-mediated ribosome repositioning directs translation of a +1 overlapping ORF that enhances viral infection. Craig H Kerr, Qing S Wang, Kyung-Mee Moon, Kathleen Keatings, Douglas W Allan, Leonard J Foster, Eric Jan

3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA. Lin Wang, Yang Xi, Wenwei Zhang, Weimao Wang, Hanjie Shen, Xiaojue Wang, Xia Zhao, Andrei Alexeev, Brock Peters, Alayna Albert, Xu Xu, Han Ren, Ou Wang, Killeen Kirkconnell, Helena Perazich, Sonya Clark, Evan Hurowitz, Ao Chen, Xun Xu, Radoje Drmanac, Yuan Jiang

Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly. Ksenia G Kuznetsova, Anna A Kliuchnikova, Irina Y Ilina, Alexey L Chernobrovkin, Svetlana E Novikova, Tatyana E Farafonova, Dmitry S Karpov, Mark V Ivanov, Anton O Goncharov, Olga E Voronko, Shamsudin S Nasaev, Ekaterina V Ilgisonis, Victor G Zgoda, Roman A Zubarev, Mikhail V Gorshkov, Sergei A Moshkovskii

TEsmall identifies small RNAs associated with targeted inhibitor resistance in melanoma. Kathryn O’Neill, Wen-Wei Liao, Ami Patel, Molly Gale Hammell

Structure probing data enhances RNA-RNA interaction prediction. Milad Miladi, Soheila Montaseri, Rolf Backofen, Martin Raden

Antisense lncRNA transcription drives stochastic Protocadherin α promoter choice. Daniele Canzio, Chiamaka Nwakeze, Adan Horta, Sandy Rajkumar, Eliot Coffey, Erin Duffy, Rachel Duffié, Matt Simon, Stavros Lomvardas, Tom Maniatis

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