RNA preprints: W36/2018

Transcripts from multicopy gene families localizing to mouse Y long arm encode piRNAs and proteins. Rachel A Jesudasan, Kankadeb Mishra, Pranatharthi Annapurna, Anurag Chaturvedi, Nissankararao M Praveena, Jomini L Alex, Sivarajan Karunanidhi, Hemakumar M Reddy

Intensive and Specific Feedback Self-control of MicroRNA Targeting Activity. Degeng Wang, Audrey Gill, Fangyuan Zhang

Musashi binding elements in Zika and related Flavivirus 3’UTRs: A comparative study in silico. Adriano de Bernardi Schneider, Michael T Wolfinger

USP21 and OTUD3 Antagonize Regulatory Ribosomal Ubiquitylation and Ribosome-Associated Quality Control. Danielle M Garshott, Elayanambi Sundaramoorthy, Marilyn Leonard, Eric J Bennett

Modeling slow-processing of toxin messenger RNAs in type-I Toxin-Antitoxin systems: post-segregational killing and noise filtering. Yusuke Himeoka, Namiko Mitarai

Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis. Saeideh Ebrahimkhani, Fatemeh Vafaee, Susannah Hallal, Heng Wei, Maggie Lee, Paul Young, Laveniya Satgunaseelan, Brindha Shivalingam, Catherine Suter, Michael Buckland, Kimberley Kaufman

Secondary structure of pre-mRNA introns for genes of 15q11-12 locus. Mapping of functionally significant motives of RNA binding proteins and f nucleosome positioning signals. Viya Borisovna Fedoseyeva, Irina Alexandrovna Zharinova, Alexander Anatolyevich Alexandrov

RNA-antimicrobial peptide complexes activate a self-sustaining TLR- and NETosis-mediated cycle of neutrophil activation. Franziska Herster, Zsofia Bittner, Sabine Dickhoefer, David Eisel, Tatjana Eigenbrod, Thomas Knorpp, Nicole Schneiderhan-Marra, Markus W Loeffler, Dominik Hartl, Lukas Freund, Knut Schaekel, Martin Heiser, Kamran Ghoreschi, Alexander N. R. Weber

The role of Aβ circRNA in Alzheimer′s disease: alternative mechanism of Aβ biogenesis from Aβ circRNA translation. Dingding Mo, Di Cui, Xinping Li

FUS controls the processing of snoRNAs into smaller RNA fragments that can regulate gene expression. Patrycja Plewka, Michal Szczesniak, Agata Stepien, Marek Zywicki, Andrzej Pacak, Martino Colombo, Izabela Makalowska, Marc-David Ruepp, Katarzyna Dorota Raczynska

Maternal Circulating MicroRNAs Control the Placental Response to Alcohol. Alexander M Tseng, Amanda H Mahnke, Alan B Wells, Nihal A Salem, Andrea M Allan, Victoria H.J. Roberts, Natali Newman, Nicole A.R. Walter, Christopher D Kroenke, Kathleen A Grant, Lisa K Akison, Karen M Moritz, Christina D Chambers, Rajesh C Miranda

Extracting information from RNA SHAPE data: Kalman filtering approach. Sana Vaziri, Patrice Koehl, Sharon Aviran

Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns. Alison D Tang, Cameron M Soulette, Marijke J van Baren, Kevyn Hart, Eva Hrabeta-Robinson, Catherine J Wu, Angela N Brooks

miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRbase. Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Jie Gui, Kui Yu, Jiuyong Li, Thuc Duy Le

A Novel Method for the Capture-based Purification of Whole Viral Native RNA Genomes. Cedric C.S. Tan, Sebastian Maurer-Stroh, Yue Wan, October M. Sessions, Paola Florez de Sessions

Several phased siRNA annotation methods can produce frequent false-positives for 24 nucleotide RNA-dominated loci in plants. Seth Polydore, Alice Lunardon, Michael J Axtell

A SKI subcomplex specifically required for the degradation of ribosome-free RNA regions. Elodie Zhang, Varun Khanna, Abdelkader Namane, Antonia Doyen, Estelle Dacheux, Bernard Turcotte, Alain Jacquier, Micheline Fromont-Racine

Dimerisation of APOBEC1 is dispensable for its RNA editing activity. Martina Chieca, Marco D Montini, Francesco Severi, Riccardo Pecori, Silvestro G Conticello

Identification of miRNAs and associated pathways regulated by Leukemia Inhibitory Factor in trophoblastic cell lines. Diana M. Morales-Prieto, Emanuel Barth, Ruby N. Gutièrrez-Samudio, Wittaya Chaiwangyen, Stephanie Ospina-Prieto, Bernd Gruhn, Ekkehard Schleußner, Manja Marz, Udo R. Markert

Active site closure stabilizes the backtracked state of RNA polymerase. Matti Turtola, Janne Makinen, Georgiy A Belogurov

Comparative analysis of miR-155 tissue expression profiles of different breeds of chicken. Chaolai Man, Sifan Xu, Yang Chang, Guanxian Wu, Wangting Zhang

The functional circular RNA, ciRS-7 (CDR1as), is biosynthesized using back-splicing promoted by inverted mammalian-wide MIRs but not primate-specific Alus. Rei Yoshimoto, Karim Rahimi, Karoline K Ebbesen, Thomas Hansen, Jorgen Kjems, Akila Mayeda

Dazl regulates germ cell survival through a network of polyA proximal mRNA interactions. Leah L Zagore, Thomas J Sweet, Molly M Hannigan, Sebastien M Weyn-Vanhentenryck, Raul Jobava, Maria Hatzoglou, Chaolin Zhang, Donny D Licatalosi

Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis. Cinta Pegueroles, Susana Iraola-Guzman, Uciel P Chorostecki, Ewa Ksiezopolska, Ester Saus, Toni Gabaldon

The novel lncRNA lnc-NR2F1 is pro-neurogenic and mutated in human neurodevelopmental disorders. Cheen Euong Ang, Qing Ma, Orly Wapinski, ShengHua Fan, Ryan A Flynn, Bradley Coe, Masahiro Onoguchi, Victor H Olmos, Brian T Do, Lynn Dukes-Rimsky, Jin Xu, Qian Yi Lee, Koji Tanabe, LiangJiang Wang, Ulrich Elling, Josef Penninger, Kun Qu, Evan E Eichler, Anand Srivastava, Marius Wernig, Howard Chang

MiR-16-1* and miR-16-2* possess strong tumor suppressive and anti-metastatic properties in osteosarcoma. Vadim V. Maximov, Saleh Khawaled, Zaidoun Salah, Lina Jaber, Nataly Bengaiev, Ahlam Barhoum, Marco Galasso, Eylon Yavin, Rami I. Aqeilan

Regulation of Cell-Type-Specific Transcriptomes by miRNA Networks During Human Brain Development. Tomasz J Nowakowski, Neha Rani, Mahdi Golkaram, Hongjun R Zhou, Beatriz Alvarado, Kylie Huch, Jay West, Anne Leyrat, Alex A Pollen, Arnold R Kriegstein, Linda R Petzold, Kenneth S Kosik

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