RNA preprints: W37/2018

The biochemical basis of microRNA targeting efficacy. Sean E McGeary, Kathy S Lin, Charlie Y Shi, Namita Bisaria, David P Bartel

AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX. Kevin R Shieh, Christina Kratschmer, Keith E Maier, John M Greally, Matthew Levy, Aaron Golden

Intensive and Specific Feedback Self-control of the Argonauts and MicroRNA Targeting Activity. Degeng Wang, Audrey Gill, Fangyuan Zhang

A novel interaction between Gβγ and RNA polymerase II regulates cardiac fibrosis. Shahriar M Khan, Ryan D Martin, Celia Bouazza, Jace Jones-Tabah, Andy Zhang, Sarah MacKinnon, Phan Trieu, Sarah Gora, Paul BS Clarke, Jason C Tanny, Terence E Hebert

An adaptive stress-induced tRNA depletion response mediates codon-based gene repression and growth suppression. Doowon Huh, Maria C Passarelli, Lisa Fish, Henrik Molina, Elizabeth A McMillan, Hani Goodarzi, Sohail F Tavazoie

CD95/Fas ligand mRNA is toxic to cells. William Putzbach, Ashley Haluck-Kangas, Quan Q Gao, Aishe A Sarshad, Elizabeth T Bartom, Austin M. Stults, Abdul S Qadir, Markus Hafner, Marcus E Peter

Transite: A computational motif-based analysis platform that identifies RNA-binding proteins modulating changes in gene expression. Konstantin Krismer, Shohreh Varmeh, Molly A. Bird, Anna Gattinger, Yi Wen Kong, Thomas Bernwinkler, Daniel A. Anderson, Andreas Heinzel, Brian A. Joughin, Ian G. Cannell, Michael B. Yaffe

Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD. Sujatha Jagannathan, Yuko Ogata, Philip Gafken, Stephen J Tapscott, Robert K Bradley

Identification of potential microRNAs associated with Herpesvirus family based on bioinformatic analysis. Kevin Lamkiewicz, Emanuel Barth, Manja Marz, Bashar Ibrahim

The key protein of endosomal mRNP transport binds translational landmark sites of cargo mRNAs.Lilli Olgeiser, Carl Haag, Susan Boerner, Jernej Ule, Anke Busch, Julian Konig, Michael Feldbrugge, KathiZarnack

Inferring Sequence-Structure Preferences of RNA-Binding Proteins with Convolutional Residual Networks. Peter K Koo, Praveen Anand, Steffan B. Paul, Sean R. Eddy

A post-transcriptional program of chemoresistance by AU-rich elements/TTP in cancer quiescence. Sooncheol Lee, Douglas Micalizzi, Samuel S Truesdell, Syed IA Bukhari, Myriam Boukhali, Jennifer Lombardi-Story, Yasutaka Kato, Ipsita Dey-Guha, Benjamin T Nicholson, Min-Kyung Choo, David T Myers, Dongjun Lee, Maria A Mazzola, Radhika Raheja, Adam Langenbucher, Nicholas J Haradhvala, Michael Lawrence, Roopali Gandhi, David A Sweetser, David Sykes, Wilhelm Haas, Daniel A Haber, Shyamala Maheswaran, Shobha Vasudevan

Evolutionary analysis of base-pairing interactions in DNA and RNA secondary structures. Michael Thomas Golden, Ben Murrell, Darren Martin, Jotun Hein

Precursor microRNA Identification Using Deep Convolutional Neural Networks. Binh Thanh Do, Vladimir Golkov, Göktuğ Erce Gürel, Daniel Cremers

Functional lability of RNA-dependent RNA polymerases in animals. Natalia Pinzón, Stéphanie Bertrand, Lucie Subirana, Isabelle Busseau, Hector Escrivá, Hervé Seitz

The interplay between small RNA pathways shapes chromatin landscape in C. elegans. Ekaterina Gushchanskaia, Ruben Esse, Qicheng Ma, Nelson Lau, Alla Grishok

DOT1L suppresses nuclear RNAi originating from enhancer elements in Caenorhabditis elegans. Ruben Esse, Ekaterina Gushchanskaia, Avery Lord, Alla Grishok

Advertisements

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google photo

You are commenting using your Google account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s