RNA preprints: W38/2018

Precursor microRNA Identification Using Deep Convolutional Neural Networks. Binh Thanh Do, Vladimir Golkov, Göktuğ Erce Gürel, Daniel Cremers

Pervasive selection against microRNA target sites in human populations. Andrea Hatlen, Antonio Marco

miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRbase. Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Weijia Zhang, Jie Gui, Kui Yu, Jiuyong Li, Thuc Duy Le

Improving The Performance Of The RNA Amber Force Field By Tuning The Hydrogen-Bonding Interactions. Petra Kuhrova, Vojtech Mlynsky, Marie Zgarbova, Miroslav Krepl, Giovanni Bussi, Robert B. Best, Michal Otyepka, Jiri Sponer, Pavel Banas

Over-expression of Hsp83 in grossly depleted hsrω lncRNA background causes synthetic lethality and l(2)gl phenocopy in Drosophila. Mukulika Ray, Sundaram Acharya, Sakshi Shambhavi, Subhash C Lakhotia

Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signaling. Fabian Finger, Franziska Ottens, Alexander Springhorn, Tanja Drexel, Lucie Proksch, Sophia Metz, Luisa Cochella, Thorsten Hoppe

Identifying Changes in RNA Editome Unique to Major Depressive Disorder. Saam Hasan, Shahriyar Mahdi Robbani, Tamanna Afroze, Gias Uddin Ahsan, Muhammad Maqsud Hossain

lncDIFF: a novel distribution-free method for differential expression analysis of long non-coding RNA. Qian Li, Xiaoqing Yu, Ritu Chaudhary, Robbert JC Slebos, Christine H Chung, Xuefeng Wang

PolyA tracks and poly-lysine repeats are the Achilles heel of Plasmodium falciparum. Slavica Pavlovic Djuranovic, Jessey Erath, Ryan J Andrews, Peter O Bayguinov, Joyce J Chung, Douglas L Chalker, James AJ Fitzpatrick, Walter N Moss, Pawel Szczesny, Sergej Djuranovic

Transcriptome profiles and novel lncRNA identification of Aedes aegypti cells in response to dengue virus serotype 1. Azali Azlan, Sattam M. Obeidat, Muhammad Amir Yunus, Ghows Azzam

SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups. Safa Jammali, Jean-David Aguilar, Esaie Kuitche, Aida Ouangraoua

The RNA-Binding Protein DND1 Acts Sequentially as a Negative Regulator of Pluripotency and a Positive Regulator of Epigenetic Modifiers Required for Germ Cell Reprogramming. Victor A Ruthig, Matthew B Friedersdorf, Jason A Garness, Steve C Munger, Corey Bunce, Jack D Keene, Blanche Capel

Short exon prediction based on multiscale products of a genomic-inspired multiscale bilateral filtering. Xiaolei Zhang, Weijun Pan

Unbiased screen of RNA tailing enzymes at single-nucleotide resolution reveals a poly(UG) polymerase required for genome integrity and RNA silencing. Melanie A. Preston, Douglas F. Porter, Fan Chen, Natascha Buter, Christopher P. Lapointe, Sunduz Keles, Judith Kimble, Marvin Wickens

Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops. Alberto Carignano, Sumit Mukherjee, Abhyudai Singh, Georg Seelig

miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish. Thomas Desvignes, Peter Batzel, Jason Sydes, B. Frank Eames, John H. Postlethwait

Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions. Yanxian Lin, James McCarty, Jennifer N. Rauch, Kris T. Delaney, Kenneth S. Kosik, Glenn H. Fredrickson, Joan-Emma Shea, Songi Han

A Novel Method for the Capture-based Purification of Whole Viral Native RNA Genomes. Cedric C.S. Tan, Sebastian Maurer-Stroh, Yue Wan, October M. Sessions, Paola Florez de Sessions

SilentMutations (SIM): a tool for analyzing long-range RNA-RNA interactions in viral genomes and structural RNAs. Daniel Desiro, Martin Hoelzer, Bashar Ibrahim, Manja Marz


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