RNA preprints: W39/2018

Interaction paths promote spliceosome module integration and network-level robustness to cascading effects. Paulo R Guimaraes Jr., Mathias M Pires, Mauricio Cantor, Patricia P Coltri

Excised linear introns regulate growth in yeast. Jeffrey T Morgan, Gerald R Fink, David P Bartel

Evolutionary analysis of base-pairing interactions in DNA and RNA secondary structures. Michael Thomas Golden, Ben Murrell, Darren Martin, Jotun Hein

CLIP-Seq and massively parallel functional analysis of the CELF6 RNA binding protein reveals a role in destabilizing synaptic gene mRNAs through interaction with 3’UTR elements in vivo. Michael A Rieger, Dana M King, Barak A Cohen, Joseph D. Dougherty

Nuclear export of chimeric mRNAs depends on an lncRNA-triggered autoregulatory loop. Zhen-Hua Chen, Zhancheng Zen, Tian-Qi Chen, Cai Han, Yu-Meng Sun, Wei Huang, Lin-Yu Sun, Ke Fang, Xue-Qun Luo, Wen-Tao Wang, Michelle YQ Chen

Changes in mRNA abundance drive differential shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription. Sarah Gilbertson, Joel D Federspiel, Ella Hartenian, Ileana M Cristea, Britt Glaunsinger

Isolation of cancer stem cells by selection for miR-302 expressing cells. Karim Rahimi, Annette Christine Fuchtbauer, Fardin Fathi, Seyed Javad Mowla, Ernst-Martin Fuchtbauer

Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes. Boas Pucker, Samuel Fraser Brockington

Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture. Katla Kristjándsóttir, Yeonui Kwak, Nathaniel D Tippens, John T Lis, Hyun Min Kang, Hojoong Kwak

Modeling RNA-binding protein specificity in vivo by precisely registering protein-RNA crosslink sites. Huijuan Feng, Suying Bao, Sebastien M Weyn-Vanhentenryck, Aziz Khan, Justin Wong, Ankeeta Shah, Elise D Flynn, Chaolin Zhang

MiR-146a-dependent regulation of CD24/AKT/β-catenin axis drives stem cell phenotype in oral cancer. Susanta Roychoudhury, Sangeeta Ghuwalewala, Dishari Ghatak, Sumit Das, Pijush Das, Ramesh Butti, Mahadeo Gorain, Gopal C Kundu

On the optimal design of metabolic RNA labeling experiments. Alexey Uvarovskii, Isabel Naarmann-de Vries, Christoph Dieterich

Alternative splicing of bicistronic MOCS1 defines a novel mitochondrial protein maturation mechanism. Simon Julius Mayr, Juliane Roeper, Guenter Schwarz

Widespread gene duplication and adaptive evolution in the RNA interference pathways of the Drosophila obscura group. Danang Crysnanto, Darren Obbard

A mouse tissue atlas of small non-coding RNA. Alina Isakova, Stephen Quake

LTMG (Left truncated mixture Gaussian) based modeling of transcriptional regulatory heterogeneities in single cell RNA-seq data – a perspective from the kinetics of mRNA metabolism. Changlin Wan, Wennan Chang, Yu Zhang, Fenil Shah, Sha Cao, Xin Chen, Melissa Fishel, Qin Ma, Chi Zhang

Single-cell microRNA/mRNA co-sequencing reveals non-genetic heterogeneity and novel regulatory mechanisms. Nayi Wang, Ji Zheng, Zhuo Chen, Yang Liu, Burak Dura, Minsuk Kwak, Juliana Xavier-Ferrucio, Yi-Chien Lu, Miaomiao Zhang, Christine Roden, Jijun Cheng, Diane Krauss, Ye Ding, Rong Fan, Jun Lu

MicroRNA-223 protects neurons from degeneration in Experimental Autoimmune Encephalomyelitis. Barbara Morquette, Camille A. Juzwik, Sienna S. Drake, Marc Charabati, Julia Zhang, Marc-Andre Lecuyer, Dylan Galloway, Aline Dumas, Omar de Faria Junior, Mardja Bueno, Isabel Rambaldi, Craig Moore, Amit Bar-Or, Luc Vallieres, Alexander Prat, Alyson Fournier

Quantifying Local Randomness in Human DNA and RNA Sequences Using Erdos Motifs. Wentian Li, Dimitrios Thanos, Astero Provata


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