RNA preprints: W41/2018

Population-scale study of eRNA transcription reveals bipartite functional enhancer architecture. Katla Kristjándsóttir, Yeonui Kwak, Nathaniel D Tippens, John T Lis, Hyun Min Kang, Hojoong Kwak

An In-Silico Mammalian Whole-Cell Model Reveals the Influence of Spatial Organization on RNA Splicing Efficiency. Zhaleh Ghaemi, Joseph Peterson, Martin Gruebele, Zaida Luthey-Schulten

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant. Boris Bogdanow, Katrin Eichelbaum, Anne Sadewasser, Xi Wang, Immanuel Husic, Katharina Paki, Martha Hergeselle, Barbara Vetter, Jingyi Hou, Wei Chen, Lueder Wiebusch, Irmtraud M. Meyer, Thorsten Wolff, Matthias Selbach

A symmetric toggle switch explains the onset of random X inactivation in different mammals. Verena Mutzel, Ikuhiro Okamoto, Ilona Dunkel, Mitinori Saitou, Luca Giorgetti, Edith Heard, Edda G. Schulz

Modular modeling improves the predictions of genetic variant effects on splicing. Jun Cheng, Thi Yen Duong Nguyen, Kamil J Cygan, Muhammed Hasan Celik, William Fairbrother, Ziga Avsec, Julien Gagneur

Integrative analysis of Zika virus genome RNA structure reveals critical determinants of viral infectivity. Qiangfeng Cliff Zhang, Pan Li, Yifan Wei, Miao Mei, Lei Tang, Lei Sun, Wenze Huang, Jianyu Zhou, Chunlin Zou, Shaojun Zhang, Chengfeng Qin, Tao Jiang, Jianfeng Dai, Xu Tan

The microRNA, miR-18a, regulates NeuroD and photoreceptor differentiation in the retina of the zebrafish. Scott M Taylor, Emily Giuffre, Patience Moseley, Peter F Hitchcock

Bromodomain Protein, BRD4, Contributes to the Regulation of Alternative Splicing. Sheetal Uppal, Qingrong Chen, Daoud Meerzaman, Anne Gegonne, Dinah S Singer

Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology. Lisa M. Hochrein, Tianjia J. Ge, Maayan Schwarzkopf, Niles A. Pierce

The ghr-miR164 and GhNAC100 module participates in cotton plant defence against Verticillium dahlia. Jiahe Wu, Guang Hu, Yu Lei, Le Wang, Jianfen Liu, Ye Tang, Zhennan Zhang, Aiming Chen, Qingzhong Peng, Zuoren Yang

Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested: Mutants in RNA Splicing and RNA Helicase, Mutants in The Boss. Lar L. Vang, Julius Adler

Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study. Dorothy Wavinya Nyamai, Ozlem Tastan Bishop

Specificity of RNA folding and its association with evolutionarily adaptive mRNA secondary structure. Gongwang Yu, Hanbing Zhu, Xiaoshu Chen, Jian-Rong Yang

jouvence, a new small nucleolar RNA required in the gut extends lifespan in Drosophila. Lucille Mellottee, Stephanie Soule, Abdelkrim Arab, Chongjian Chen, Jean-Rene Martin

Dynamic regulation of the Trypanosoma brucei transferrin receptor in response to iron starvation is mediated via the 3’UTR. Corinna Benz, Winston Lo, Nadin Fathallah, Ashley Connor-Guscott, Henry J Benns, Michael D. Urbaniak

A prognostic signature for lower-grade gliomas based on expression of long noncoding RNAs. Manjari Kiran, Ajay Chatrath, Xiwei Tang, Daniel Macrae Keenan, Anindya Dutta

Density dependent enhancement effect of Wolbachia and the host RNAi response to a densovirus in Aedes cells. Rhys Parry, Cameron Bishop, Lachlan De Hayr, Sassan Asgari

Development of a novel signature of long noncoding RNAs as a prognostic biomarker for esophageal cancer. Yan Miao, Jing Sui, Ying Zhang, Lihong Yin

DNA damage dependent hypomethylation regulates the pro-angiogenic LncRNA MEG9. Cristina Espinosa-Diez, RaeAnna Wilson, Rishima Mukherjee, Marlee Feltham, Clayton Hudson, Rebecca Ruhl, Sudarshan Anand

The influenza A virus endoribonuclease PA-X usurps host mRNA processing machinery to limit host gene expression. Lea Gaucherand, Brittany K Porter, Summer K Schmaling, Christopher Harley Rycroft, Yuzo Kevorkian, Craig McCormick, Denys A Khaperskyy, Marta Gaglia

Metatranscriptome profiling of the dynamic transcription of mRNA and sRNA of a probiotic Lactobacillus strain in human gut. Qiuwen He, zhihong sun, Jianmin Qiao, Dong Chen, Jie Huang, Xiaotian Luo, Jia Ding, Jiachao Zhang, Qiangchuan Hou, Yi Zhang, Heping Zhang

DNA and RNA binding mediate the toxicity of arginine-rich peptides encoded by C9ORF72 GGGGCC repeats. Vanesa Lafarga, Oleksandra Sirozh, Irene Diaz-Lopez, Misaru Hisaoka, Eduardo Zarzuela, Jasminka Boskovic, Bogdan Jovanovic, Rafael Fernandez-Leiro, Javier Munoz, Georg Stoecklin, Ivan Ventoso, Oscar Fernandez-Capetillo

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