RNA preprints: W43/2018

Interplay between consensus and divergent RNA polymerase II C-terminal domain repeats in viability and targeting. Feiyue Lu, Bede Portz, David S Gilmour

mTORC1 Restricts Hepatitis C Virus Replication Through ULK1-mediated Suppression of miR-122 and Facilitates Post-replication Events. Manish Kumar Johri, Hiren Vasantrai Lashkari, Dhiviya Vedagiri, Divya Gupta, Krishnan Harshan

MicroRNA-200c suppresses epithelial-mesenchymal transition of ovarian cancer by targeting cofilin-2. Xuechen Yu, Yuanzhen Zhang, Wei Zhang, Huijun Chen

Identification and characterization of Aedes albopictus long noncoding RNAs provides insights into their roles in development and flavivirus infection. Azali Azlan, Muhammad Amir Yunus, Ghows Azzam

sRNA-target Prediction Organizing Tool (SPOT) integrates computational and experimental data to facilitate functional characterization of bacterial small RNAs. Alisa M King, Carin K Vanderpool, Patrick Degnan

A global map of RNA binding protein occupancy guides functional dissection of post-transcriptional regulation of the T cell transcriptome. Adam J Litterman, Wandi S Zhu, Robin Kageyama, Wenxue Zhao, Noah Zaitlen, David J Erle, K. Mark Ansel

Candidate Phyla Radiation Roizmanbacteria from hot springs have novel, unexpectedly abundant, and potentially alternatively functioning CRISPR-Cas systems. Lin-Xing Chen, Basem Al-Shayeb, Raphael Meheust, Wen-Jun Li, Jennifer A Doudna, Jillian F Banfield

RNA Binding Motif Protein 48 is required for U12 splicing and maize endosperm differentiation. Fang Bai, Jacob Corll, Donya N Shodja, Ruth Davenport, Guanqiao Feng, Janaki Mudunkothge, Christian J Brigolin, Federico Martin, Gertraud Spielbauer, Chi-Wah Tseung, Amy E Seibert, W. Brad Barbazuk, Shailesh Lal, A. Mark Settles

Transgenic Mice and Pluripotent Stem Cells Express EGFP under the Control of miR-302 Promoter. Karim Rahimi, Sara Parsa, Mehrnoush Nikzaban, Seyed Javad Mowla, Fardin Fathi

Re-purposing Ac/Ds transgenic system for CRISPR/dCas9 modulation of enhancers and non-coding RNAs in zebrafish. Vanessa Chong-Morrison, Filipa C. Simoes, Upeka Senanayake, Dervla S. Carroll, Paul R. Riley, Tatjana Sauka-Spengler

Arginine methylation of DDX5 RGG/RG motif by PRMT5 regulates RNA/DNA resolution. Stephane Richard, Sofiane Mersaoui, Zhenbao Yu, Yan Coulombe, Franciele Busatto, Martin Karam, Jean-Yves Masson

Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and whole rrn operon. Anna Cusco, Carlotta Catozzi, Joaquim Vines, Armand Sanchez, Olga Francino

Origins and Evolution of the Global RNA Virome. Valerian V. Dolja, Yuri I Wolf, Darius Kazlauskas, Jaime Iranzo, Adriana Lucía-Sanz, Jens H. Kuhn, Mart Krupovic, Eugene V Koonin

A small RNA controls bacterial resistance to gentamicin during iron starvation. Sylvia Chareyre, Barras Frederic, Pierre Mandin

Sendai Virus Infection Induces Expression of Novel RNAs in Human Cells. Roli Mandhana, Curt M. Horvath

Dysregulation of circular RNAs in myotonic dystrophy type 1. Christine Voellenkle, Alessandra Perfetti, Matteo Carrara, Paola Fuschi, Laura Valentina Renna, Marialucia Longo, Rosanna Cardani, Rea Valaperta, Gabriella Silvestri, Ivano Legnini, Irene Bozzoni, Denis Furling, Carlo Gaetano, Germana Falcone, Giovanni Meola, Fabio Martelli

A Haploid Genetic Screening Method for Proteins Influencing Mammalian Nonsense-Mediated mRNA Decay Activity. Maximilian Popp, Lynne Maquat

Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates. Paulo L Onuchic, Anthony N Milin, Ibraheem Alshareedah, Ashok A Deniz, Priya R Banerjee

Maternal and zygotic gene regulatory effects of endogenous RNAi pathways. Miguel Vasconcelos Almeida, António Miguel de Jesus Domingues, Rene F Ketting

Interplay between substrate recognition, 5′ end tRNA processing and methylation activity of human mitochondrial RNase P. Agnes Karasik, Carol Fierke, Markos Koutmos

Multiple decay events target HAC1 mRNA during splicing to regulate the unfolded protein response. Patrick D. Cherry, Sally E. Peach, Jay R. Hesselberth

Inference of splicing motifs through visualization of recurrent networks. Aparajita Dutta, Aman Dalmia, Athul R, Kusum Kumari Singh, Ashish Anand

CENP-A associated lncRNAs influence chromosome segregation in human cells. Delphine Quenet, David Sturgill, Marin Olson, Yamini Dalal

Proximity RNA labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules. Alejandro Padron, Shintaro Iwasaki, Nicholas Ingolia

Structure reveals mechanism of CRISPR RNA-guided nuclease recruitment and anti-CRISPR viral mimicry. MaryClare F. Rollins, Saikat Chowdhury, Joshua Carter, Sarah M. Golden, Heini M. Miettinen, Andrew Santiago-Frangos, Dominick Faith, C. Martin Lawrence, Gabriel C. Lander, Blake Wiedenheft

Crosstalk between RNA Pol II C-Terminal Domain Acetylation and Phosphorylation via RPRD Proteins. Ibraheem Ali, Diego Garrido-Ruiz, Zuyao Ni, Jeffrey R Johnson, Heng Zhang, Pao-Chen Li, Ryan J Conrad, Xinghua Guo, Jinrong Min, Jack Greenblatt, Matthew Jacobson, Nevan J Krogan, Melanie Ott

The multi PAM2 protein Upa2 functions as novel core component of endosomal mRNA transport. Silke Jankowski, Thomas Pohlmann, Sebastian Baumann, Sabrina Zander, Senthil Kumar Devan, Michael Feldbruegge

AMPK regulates germline stem cell quiescence and integrity through an endogenous small RNA pathway. Pratik Kadekar, Richard Roy

A Biologically Motivated Asymmetric Exclusion Process: interplay of congestion in RNA polymerase traffic and slippage of nascent transcript. Soumendu Ghosh, Annwesha Dutta, Shubhadeep Patra, Jun Sato, Katsuhiro Nishinari, Debashish Chowdhury

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