RNA preprints: W44/2018

Identification of RNA-associated peptides, iRAP, defines precise sites of protein-RNA interaction. Lauri Peil, Sakharam Waghmare, Lutz Fischer, Michaela Spitzer, David Tollervey, Juri Rappsilber

Bud13 Promotes a Type I Interferon Response By Countering Intron Retention in Irf7. Luke S Frankiw, Devdoot Majumdar, Christian Burns, Logan Vlach, Annie Moradian, Michael Sweredoski, David Baltimore

Pentatricopeptide repeat poly(A) binding protein from mitochondria of trypanosomes. Mikhail V. Mesitov, Tian Yu, Takuma Suematsu, Francois Sement, Liye Zhang, Clinton Yu, Lan Huang, Inna Afasizheva

Staufen2 mediated RNA recognition and localization requires combinatorial action of multiple domains. Simone Heber, Imre Gaspar, Jan-Niklas Tants, Johannes Günther, Sandra M Fernández Moya, Robert Janowski, Anne Ephrussi, Michael Sattler, Dierk Niessing

Functional dissection of the ARGONAUTE7 promoter. J Steen Hoyer, Jose L Pruneda-Paz, Ghislain Breton, Mariah A Hassert, Emily E Holcomb, Halley Fowler, Kaylyn M Bauer, Jacob Mreen, Steve A Kay, James C Carrington

Mapping native R-loops genome-wide using a targeted nuclease approach. Qingqing Yan, Emily J Shields, Roberto Bonasio, Kavitha Sarma

Atlas of Subcellular RNA Localization Revealed by APEX-seq. Furqan M Fazal, Shuo Han, Pornchai Kaewsapsak, Kevin R Parker, Jin Xu, Alistair N Boettiger, Howard Y Chang, Alice Y Ting

The nuclear RNAi factor, NRDE2, prevents the accumulation of DNA damage during mitosis in stressful growth conditions. Aarati Asundi, Srivats Venkataramanan, Gina Caldas Cuellar, Atsushi Suzuki, Stephen N Floor, Andrei Goga, Noelle L’Etoile

N6-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis. Daniel Kuppers, Sonali Arora, Yiting Lim, Andrea Lim, Lucas Carter, Philip Corrin, Christopher Plasier, Ryan Basom, Jeffrey Delrow, Shiyan Wang, Housheng He, Beverly Torok-Storb, Andrew Hsieh, Patrick Paddison

RNA is a critical element for the sizing and the composition of phase-separated RNA-protein condensates. Marina Garcia-Jove Navarro, Shunnichi Kashida, Racha Chouaib, Sylvie Souquere, Gerard Pierron, Dominique Weil, Zoher Gueroui

Dynamics of transposable element invasions with piRNA clusters. Robert Kofler

Long Non-Coding RNA LncKdm2b Regulates Cortical Neuronal Differentiation by Cis-Activating Kdm2b. Wei Li, Wenchen Shen, Bo Zhang, Kuan Tian, Yamu Li, Lili Mu, Zhiyuan Luo, Xiaoling Zhong, Xudong Wu, Ying Liu, Yan Zhou

Genome-wide identification of alternative splicing events that regulate protein transport across the secretory pathway. Alexander Neumann, Magdalena Schindler, Didrik Olofsson, Ilka Wilhelmi, Annette Schürmann, Florian Heyd

Tensor decomposition–based unsupervised feature extraction for integrated analysis of TCGA data on microRNA expression and promoter methylation of genes in ovarian cancer. Y-h. Taguchi, Ka-Lok Ng

DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data. Albert Y Xue, Angela M Yu, Julius B Lucks, Neda Bagheri

Inferring novel lncRNA associated with Ventricular septal defect by DNA methylation interaction network. Min Zhang, Yue Gu, Mu Su, Shumei Zhang, Chuangeng Chen, Wenhua Lv, Yan Zhang

Adenosine Deaminase Acting on RNA 1 Associates with Orf Virus OV20.0 and Enhances Viral Replication. Guan-Ru Liao, Yeu-Yang Tseng, Jing-Yu Tseng, Fong-Yuan Lin, Yumiko Yamada, Hao-Ping Liu, Chih-Ying Kuan, Wei-Li Hsu

Loss of Rap1 supports recombination-based telomere maintenance independent of RNA-DNA hybrids in fission yeast. Yan Hu, Henrietta W Bennett, Na Liu, Martin Moravec, Jessica F Williams, Claus M Azzalin, Megan C King

A post-transcriptional program of chemoresistance by AU-rich elements/TTP in cancer quiescence. Sooncheol Lee, Douglas Micalizzi, Samuel S Truesdell, Syed IA Bukhari, Myriam Boukhali, Jennifer Lombardi-Story, Yasutaka Kato, Ipsita Dey-Guha, Benjamin T Nicholson, Min-Kyung Choo, David T Myers, Dongjun Lee, Maria A Mazzola, Radhika Raheja, Adam Langenbucher, Nicholas J Haradhvala, Michael Lawrence, Roopali Gandhi, David A Sweetser, David Sykes, Wilhelm Haas, Daniel A Haber, Shyamala Maheswaran, Shobha Vasudevan

let-7 controls the transition to adulthood by releasing select transcriptional regulators from repression by LIN41. Florian Aeschimann, Anca Neagu, Magdalene Rausch, Helge Grosshans

Maternal Pregnancy-Associated Circulating MicroRNA predictors of infant birth outcomes are Determinants of Placental Maturation. Alexander M Tseng, Amanda H Mahnke, Alan B Wells, Nihal A Salem, Andrea M Allan, Victoria H.J. Roberts, Natali Newman, Nicole A.R. Walter, Christopher D Kroenke, Kathleen A Grant, Lisa K Akison, Karen M Moritz, Christina D Chambers, Rajesh C Miranda

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