RNA preprints: W47/2018

Remote control of alternative splicing in roots through TOR kinase. Ezequiel Petrillo, Stefan Riegler, Armin Fuchs, Lucas Servi, Micaela A. Godoy Herz, Maria Guillermina Kubaczka, Peter Venhuizen, Alois Schweighofer, Alberto R Kornblihtt, Craig Simpson, John W.S. Brown, Christian Meyer, Maria Kalyna, Andrea Barta

RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins. Jing Zhang, Jason Liu, Donghoon Lee, Jo-Jo Feng, Lucas Lochovsky, Shaoke Lou, Michael Rutenberg-Schoenberg, Mark Gerstein

Convolutional models of RNA energetics. Michelle J Wu

Pan-Cancer Repository of Validated Natural and Cryptic mRNA Splicing Mutations. Ben C. Shirley, Eliseos J. Mucaki, Peter K Rogan

Modulation of RNA-dependent interactions in stress granules prevents persistent TDP-43 accumulation in ALS/FTD. Mark Y. Fang, Sebastian Markmiller, William E. Dowdle, Anthony Q. Vu, Paul J. Bushway, Sheng Ding, Mark M. Mercola, Joseph W. Lewcock, Gene Yeo

Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs. Zhangming Yan, Norman Huang, Weixin Wu, Weizhogn Chen, Yiqun Jiang, Jingyao Chen, Xuerui Huang, Xingzhao Wen, Jie Xu, Qiushi Jin, Kang Zhang, Zhen Chen, Shu Chien, Sheng Zhong

Structural and biochemical studies define Nudt12 as a new class of RNA deNADding enzyme in mammalian cells. Ewa Grudzien-Nogalska, Yixuan Wu, Xinfu Jiao, Huijuan Cui, Ronald P. Hart, Liang Tong, Megerditch Kiledjian

The long noncoding RNA Hand2as orchestrates heart development through regulation of precise expression of HAND2. Xue Han, Jiejie Zhang, Yaxi Liu, Xiaoying Fan, Shanshan Ai, Yingjie Luo, Xin Li, Sai Luo, Hui Zheng, Yanzhu Yue, Zai Chang, Zhongzhou Yang, Fuchou Tang, Aibin He, Xiaohua Shen

Comprehensive analysis of miRNA and protein profiles within exosomes derived from canine lymphoid tumour cell lines. Hajime Asada, Hirotaka Tomiyasu, Takao Uchikai, Genki Ishihara, Yuko Goto-Koshino, Koichi Ohno, Hajime Tsujimoto

Beyond the seed: structural basis for supplementary mircoRNA targeting. Jessica Sheu-Gruttadauria, Yao Xiao, Luca F. R. Gebert, Ian J. MacRae

Cold Inducible RNA-binding protein (CIRBP) adjusts clock gene expression and REM sleep recovery after sleep deprivation. Marieke M.B. Hoekstra, Paul Franken, Yann Emmenegger

Modeling slow-processing of toxin messenger RNAs in type-I Toxin-Antitoxin systems: post-segregational killing and noise filtering. Yusuke Himeoka, Namiko Mitarai

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs. Lilli Olgeiser, Carl Haag, Susan Boerner, Jernej Ule, Anke Busch, Janine Koepke, Julian Konig, Michael Feldbrugge, Kathi Zarnack

Proteomic analysis of the Pseudomonas aeruginosa iron starvation response reveals PrrF sRNA-dependent regulation of amino acid metabolism, iron-sulfur cluster biogenesis, motility, and zinc homeostasis. Cassandra E. Nelson, Weiliang Huang, Luke K. Brewer, Angela T. Nguyen, Maureen A. Kane, Angela Wilks, Amanda G. Oglesby-Sherrouse

Landscape of RNA editing reveals new insights into the dynamic gene regulation of spermatogenesis based on integrated RNA-Seq. Xiaodan Wang, Zhenshuo Zhu, Xiaolong Wu, Hao Li, Tongtong Li, Qun Li, Peng Zhang, Leijie Li, Dongxue Che, Xia Xiao, Jinlian Hua, Mingzhi Liao

Functional dissection of the ARGONAUTE7 promoter. J Steen Hoyer, Jose L Pruneda-Paz, Ghislain Breton, Mariah A Hassert, Emily E Holcomb, Halley Fowler, Kaylyn M Bauer, Jacob Mreen, Steve A Kay, James C Carrington

Novel autoregulatory cases of alternative splicing coupled with nonsense-mediated mRNA decay. Dmitri Pervouchine, Iaroslav Popov, Andy Berry, Beatrice Borsari, Adam Frankish, Roderic Guig

Live-cell single RNA imaging reveals bursts of translational frameshifting. Kenneth R Lyon Jr., Luis U Aguilera, Tatsuya Morisaki, Brian Munsky, Timothy J Stasevich

The mechanism of Ccr4-Not recruitment to specific mRNAs involves sequence-selective tethering by RNA-binding proteins. Michael W. Webster, James A. W. Stowell, Lori A Passmore

Identification and characterization of miRNA169 family members in banana (Musa acuminata L.) that respond to fusarium oxysporum f. sp. cubense infection in banana cultivars. Shun Song​​, Yi Xu​, Dongmei Huang, Muhammad Aleem Ashraf, Jingyang Li, Wei Hu, Zhiqiang Jin, Changying Zeng, Fenling Tang, Biyu Xu, Huicai Zeng, Yujia Li, Jianghui Xie

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