RNA preprints: W1/2019

Dysregulation of splicing-related proteins in prostate cancer is controlled by FOXA1. John Gordon Foster, Rebecca Arkell, Marco Del Giudice, Chinedu Anene, Andrea Lauria, John Daniel Gerard Kelly, Nicholas Robert Lemoine, Salvatore Oliviero, Matteo Cereda, Prabhakar Rajan

PTBP1 mRNA isoforms and regulation of their translation. Luisa M Arake de Tacca, Mia C Pulos, Stephen N Floor, Jamie Cate

Detection of circulating extracellular mRNAs by modified small RNA-sequencing analysis. Kemal Marc Akat, Youngmin Anna Lee, Arlene Hurley, Pavel Morozov, Klaas E.A. Max, Miguel Brown, Kimberly Bogardus, Anuoluwapo Sopeyin, Kai Hildner, Thomas Diacovo, Markus F. Neurath, Martin Borggrefe, Thomas Tuschl

A widespread Xrn1-resistant RNA motif composed of two short hairpins. Ivar W Dilweg, Alexander P Gultyaev, Rene Olsthoorn

Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides. Franklin Wang-Ngai Chow, Georgios Koutsovoulos, Cesaré Ovando-Vázquez, Kyriaki Neophytou, Dominik R Laetsch, Jose R Bermúdez-Barrientos, Sujai Kumar, Elaine Robertson, Julie M Claycomb, Mark Blaxter, Cei Abreu-Goodger, Amy H Buck

Genetic interactions of histone acetyl-transferase enzymes encoding genes Gcn5 and Mof with hsrω lncRNA gene. Deo Prakash Chaturvedi

Disentangling sRNA-Seq data to study RNA communication between species. Jose Roberto Bermudez-Barrientos, Obed Ramirez-Sanchez, Franklin WN Chow, Amy H Buck, Cei Abreu-Goodger

Detecting Circular RNA from High-throughput Sequence Data with de Bruijn Graph. Xin Li, Yufeng Wu

SpliceV: Analysis and publication quality printing of linear and circular RNA splicing, expression and regulation. Nathan A Ungerleider, Erik K Flemington

Trapping a somatic endogenous retrovirus into a germline piRNA cluster immunizes the germline against further invasion. Celine Duc, Marianne Yoth, Nolwenn Mouniee, Silke Jensen, Chantal Vaury, Emilie Brasset

In vitro analysis of RNA polymerase II elongation complex dynamics. Yoo Jin Joo, Scott B. Ficarro, Yujin Chun, Jarrod A. Marto, Stephen Buratowski

Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features. Lisa Barros De Andrade e Sousa, Iris Jonkers, Laurene Syx, Julie Chaumell, Christel Picard, Benjamin Foret, Chong-Jian Chen, John T. Lis, Edith Heard, Edda G. Schulz, Annalisa Marsico

Overexpression of long noncoding RNA GAS5 suppresses tumorigenesis and development of gastric cancer by sponging miR-106a-5p through the Akt/mToR pathway. Shuaijun Dong, Xiefu Zhang, Dechun Liu

Systematic identification and characterization of Aedes aegypti long noncoding RNAs. Azali Azlan, Sattam M. Obeidat, Muhammad Amir Yunus, Ghows Azzam

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis. Bazin Jeremie, Kiruthiga Gayathri Mariappan, Thomas Blein, Ronny Volz, Martin Crespi, Heribert Hirt

Tombusvirus p19 captures RNase III-cleaved double-stranded RNAs formed by overlapping sense and antisense transcripts in E. coli. Linfeng Huang, Padraig Deighan, Jingmin Jin, Yingxue Li, Elaine Lee, Shirley S. Mo, Heather Hoover, Sahar Abubucker, Nancy Finkel, Larry McReynolds, Ann Hochschild, Judy Lieberman

Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD. Sujatha Jagannathan, Yuko Ogata, Philip Gafken, Stephen J Tapscott, Robert K Bradley

Evolutionary implications of the microRNA- and piRNA complement of Lepidodermella squamata (Gastrotricha). Bastian Fromm, Juan Pablo Tosar, Felipe Aguilera, Marc Riemer Friedlander, Lutz Bachmann, Andreas Hejnol

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