RNA preprints: W50/2018

GeTallele: a mathematical model and a toolbox for integrative analysis and visualization of DNA and RNA allele frequencies. Piotr M Słowiński, Muzi Li, Paula Restrepo, Nawaf Alomran, Liam Spurr, Christian Miller, Krasimira Tsaneva-Atanasova, Anelia Horvath

Basal Role for Nrf2-transgne on transcriptional (mRNA/miRNA) regulation in the mouse myocardium. Arun Jyothidasan, Gobinath Shanmugam, John Zhang, Brain Dally, David Crossman, Rajasekaran Namakkal Soorappan

MicroRNA-27a mitigates hyperlipidemia and atherosclerosis by modulating cholesterol homeostasis. Abrar Ali Khan, Heena Agarwal, S Santosh Reddy, Vikas Arige, Vinayak Gupta, Ananthamohan Kalyani, G Bhanuprakash Reddy, Madhu Dikshit, Manoj K Barthwal, Nitish Ranjan Mahapatra

Integrated analysis of sex-biased mRNA and miRNA expression profiles in the gonad of the discus fish (Symphysodon aequifasciatus). yuanshuai Fu, Zhe Xu, Zaizhong Chen, Bin Wen, Jianzhong Gao

The impact of sex on alternative splicing. Guy Karlebach, Diogo F.T. Veiga, Anne Deslattes Mays, Anil K Kesarwani, Daniel Danis, Georgios Kararigas, Xingmin Aaron Zhang, Joshy George, Guru Ananda, Robin Steinhaus, Peter Hansen, Dominik Seelow, Chris Bizon, Rebecca Boyles, Chris Ball, Julie A McMurry, Melissa A Haendel, Jeremy Yang, Tudor Oprea, Mitali Mukerji, Olga Anczukow, Jacques Banchereau, Peter N Robinson

Dynamics of microRNA expression during mouse prenatal development. Rabi Murad, Sorena Rahmanian, Alessandra Breschi, Weihua Zeng, Brian A Williams, Mark Mackiewicz, Brian Roberts, Sarah Meadows, Dianne Moore, Carrie Davis, Diane Trout, Chris Zaleski, Alexander Dobin, Lei-Hoon Sei, Jorg Drenkow, Alex Scavelli, Thomas R Gingeras, Barbara Wold, Richard M. Myers, Roderic Guigo, Ali Mortazavi

Spontaneous driving forces give rise to protein-RNA condensates with coexisting phases and complex material properties. Steven Boeynaems, Alex S Holehouse, Venera Weinhardt, Denes Kovacs, Joris Van Lindt, Carolyn Larabell, Ludo Van Den Bosch, Rhiju Das, Peter Tompa, Rohit V Pappu, Aaron Gitler

The telomeric Cdc13-Stn1-Ten1 complex regulates RNA polymerase II transcription. Olga Calvo, Nathalie Grandin, Antonio Jordan-Pla, Esperanza Minambres, Noelia Gonzalez-Polo, Jose E Perez-Ortin, Michel Charbonneau

Short hairpin RNAs artifactually impair cell growth and suppress clustered microRNA expression. John Powers, Edroaldo Lummertz da Rocha, Daniel Pearson, Pavlos Missios, Tarja Yvanka de Soysa, Jessica Barragan, Patrick Cahan, George Daley

beta-actin mRNA interactome mapping by proximity biotinylation. Joyita Mukherjee, Orit Hermesh, Nicolas Nalpas, Mirita Franz-Wachtel, Boris Macek, Ralf-Peter Jansen

An RNA-binding region regulates CTCF clustering and chromatin looping. Anders S Hansen, Tsung-Han S Hsieh, Claudia Cattoglio, Iryna Pustova, Xavier Darzacq, Robert Tjian

Exploring the role of Polycomb recruitment in Xist-mediated silencing of the X chromosome in ES cells. Aurelie Bousard, Ana Claudia Raposo, Jan Jakub Zylicz, Christel Picard, Vanessa Borges Pires, Yanyan Qi, Laurene Syx, Howard Y. Chang, Edith Heard, Simao Teixeira da Rocha

Guided nuclear exploration increases CTCF target search efficiency. Anders S Hansen, Assaf Amitai, Claudia Cattoglio, Robert Tjian, Xavier Darzacq

One-dimensional sliding assists σ70-dependent promoter binding by Escherichia coli RNA polymerase. Iddo Heller, Margherita Marchetti, Abhishek Mazumder, Anirban Chakraborty, Agata M. Malinowska, Wouter H. Roos, Richard H. Ebright, Erwin J.G. Peterman, Gijs J.L. Wuite

Novel Computational Method to Define RNA PSRs Explains Influenza A Virus Nucleotide Conservation. Andrey Chursov, Nathan Fridlyand, Albert A Sufianov, Oleg I Kiselev, Irina Baranovskaya, Andrey Vasin, Jonathan W Yewdell, Alexander Shneider

mtDNA eQTLs and the m1A 16S rRNA modification explain mtDNA tissue-specific gene expression pattern in humans. Tal Cohen, Chen Mordechai, Alal Eran, Dan Mishmar

Synonymous SNPs of viral genes facilitate virus to escape host antiviral RNAi immunity. Xiaobo Zhang, Yuechao Sun, Yu Zhang

Revisiting the window of opportunity for co-transcriptional splicing efficiency and fidelity. Vahid Aslanzadeh, Jean Beggs

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