RNA preprints: W52/2018

A systems view of spliceosomal assembly and branchpoints with iCLIP. Michael Briese, Nejc Haberman, Christopher Sibley, Anob Chakrabarti, Zhen Wang, Julian Konig, David Perera, Vihandha Wickramasinghe, Ashok Venkitaraman, Nicholas Luscombe, Christopher Smith, Tomaz Curk, Jernej Ule

RNA Polymerase II Independent Recruitment of SPT6 at Transcription Start Sites in Arabidopsis. Chen Chen, Jie Shu, Chenlong Li, Raj K. Thapa, Vi Nguyen, Kangfu Yu, Zechun Yuan, Susanne E. Kohalmi, Jun Liu, Frederic Marsolais, Shangzhi Huang, Yuhai Cui

Structures of the Human Spliceosomes Before and After Release of the Ligated Exon. Xiaofeng Zhang, Xiechao Zhan, Chuangye Yan, Wenyu Zhang, Dongliang Liu, Jianlin Lei, Yigong Shi

Multiplexed detection of RNA using MERFISH and branched DNA amplification. Chenglong Xia, Hazen P Babcock, Jeffrey R Moffitt, Xiaowei Zhuang

RNA sequencing identifies dysregulated circular RNAs in early-stage breast cancer. Vittal Rangan Arvinden, Deva Magendhra Rao Arinagiri Kuha, Meenakumari Balaiah, Priya Ramanathan, Shirley Sundersingh, Sridevi Velusami, Rajkumar Thangarajan, Zdenko Herceg, Samson Mani

A Regulatory Loop between the Retinoid-Related Orphan Nuclear Receptor NHR-23 and let-7 family microRNAs Modulates the C. elegans Molting Cycle. Ruhi Patel, Alison R Frand

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Victor Barrera, Roderic Espin, Eric Londin, Aristeidis G Telonis, Elisa Ficarra, Marc R Friedlander, John H Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S Vlachos, Marc K. Halushka, Lorena Pantano

Transgenic Mice and Pluripotent Stem Cells Express EGFP under the Control of miR-302 Promoter. Karim Rahimi, Sara Parsa, Mehrnoush Nikzaban, Seyed Javad Mowla, Fardin Fathi

The miR-338-3p involve in response to acute radiation syndrome by targeting DYRK2 in Tibet minipig. Wang Yujue, Yue Min, Guo Kai, Wu Shaojie, Tian Yuguang

miRNAs, target genes expression and morphological analysis on the heart in gestational protein-restricted offspring. José A.R. Gontijo, Heloisa Balan Assalin, Patrícia Aline Boer

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs. Alexandra L McCorkindale, Philipp Wahle, Sascha Werner, Irwin Jungreis, Peter Menzel, Chinmay J Shukla, Ruben Lopes Pereira Abreu, Rafael Irizarry, Irmtraud Meyer, Manolis Kellis, Robert P Zinzen

Differential expression of microRNAs in Alzheimer’s disease brain, blood and cerebrospinal fluid: a systematic review and meta-analysis. Petros Takousis, Angélique Sadlon, Jessica Schulz, Inken Wohlers, Valerija Dobricic, Lefkos Middleton, Christina M. Lill, Robert Perneczky, Lars Bertram

A machine-learning classifier trained with microRNA ratios to distinguish melanomas from nevi. Rodrigo Torres, Ursula E Lang, Miroslav Hejna, Samuel J Shelton, Nancy M Joseph, Alan Hunter Shain, Iwei Yeh, Maria L Wei, Michael C. Oldham, Boris C Bastian, Robert L Judson-Torres

A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis, to couple metabolism to cell cycle progression. Ritu Gupta, Adhish Walvekar, Shun Liang, Zeenat Rashida, Premal Shah, Sunil Laxman

Detection of a novel mutation G511T in the 530 loop in 16S rRNA in multi drugs resistant Mycobacterium tuberculosis isolated from Sudanese patients. Yousif Mohammed Alfatih, Abeer Babiker Idris, Hadeel Gassim Hassan, Eman O M Nour, Nihad M A Elhaj, Salah-Eldin El-Zaki, Muataz M Eldirdery, Rahma H Ali, Nuha Y Ibrahim, Asrar M Elegail, Mohamed Ahmed Salih

miRsponge: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules. Junpeng Zhang, Lin Liu, Taosheng Xu, Yong Xie, Chunwen Zhao, Jiuyong Li, Thuc Duy Le

Biophysical characterizations of the recognition of the AAUAAA polyadenylation signal. Keith Hamilton, Yadong Sun, Liang Tong

Proteasome inhibitor-induced modulation reveals the spliceosome as a specific therapeutic vulnerability in multiple myeloma. Hector Han-Li Huang, Ian D. Ferguson, Alexis M. Thornton, Christine Y. T. Lam, Yu-Hsiu Tony Lin, Prabhakar Bastola, Margarette C. Mariano, Makeba D. Marcoulis, Julia Malato, Paul Phojanakong, Byron C. Hann, Angela N Brooks, Arun P. Wiita

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