RNA preprints: W5/2019

RNA-antimicrobial peptide LL-37 complexes activate a self-sustaining TLR- and NET-mediated cycle of neutrophil activation. Franziska Herster, Zsofia Bittner, Sabine Dickhoefer, David Eisel, Tatjana Eigenbrod, Thomas Knorpp, Nicole Schneiderhan-Marra, Markus W Loeffler, Hubert Kalbacher, Dominik Hartl, Lukas Freund, Knut Schaekel, Martin Heiser, Kamran Ghoreschi, Alexander N. R. Weber

Tubulin mRNA stability is sensitive to change in microtubule dynamics caused by multiple physiological and toxic cues. Ivana Gasic, Sarah A. Boswell, Timothy J. Mitchison

G4-iM Grinder: DNA and RNA G-Quadruplex, i-Motif and higher order structure search and analyser tool. Efres Belmonte Reche, Juan Carlos Morales

Stool-derived eukaryotic RNA biomarkers for detection of high-risk adenomas. Erica K. Barnell, Yiming Kang, Andrew R. Barnell, Katie M. Campbell, Kimberly R. Kruse, Elizabeth M. Wurtzler, Malachi Griffith, Aadel A. Chaudhuri, Obi L. Griffith

A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic mRNAs in Agrobacterium tumefaciens. Benjamin Diel, Magali Dequivre, Florence Wisniewski-Dyé, Ludovic Vial, Florence Hommais

The SUMO ligase Su(var)2-10 links piRNA-guided target recognition to chromatin silencing. Maria Ninova, Yung-Chia Ariel Chen, Baira Godneeva, Alicia K Rogers, Yicheng Luo, Alexei A Aravin, Katalin Fejes Tóth

lncRNA Neat1 drives neuronal histone methylation and age-related memory impairments. Anderson A Butler, Daniel R Johnston, Simranjit Kaur, Farah D Lubin

Argonaute bypasses cellular obstacles without hindrance during target search. Tao Ju Cui, Misha Klein, Jorrit Hegge, Stanley D Chandradoss, John van der Oost, Martin Depken, Chirlmin Joo

DypFISH: Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution. Anca F. Savulescu, Robyn Brackin, Emmanuel Bouilhol, Benjamin Dartigues, Jonathan H. Warrell, Mafalda R. Pimentel, Stephane Dallongeville, Jan Schmoranzer, Jean-Christophe Olivo-Marin, Edgar R. Gomes, Macha Nikolski, Musa M. Mhlanga

Regulation of CHD2 expression by the Chaserr long noncoding RNA is essential for viability. Aviv Rom, Liliya Melamed, Micah Jonathan Goldrich, Rotem Kadir, Matan Golan, Inbal Biton, Rotem Ben-Tov Perry, Igor Ulitsky

Impact of population structure in the design of RNA-based diagnostics for antibiotic resistance in Neisseria gonorrhoeae. Crista B. Wadsworth, Mohamad R.A. Sater, Roby P. Bhattacharyya, Yonatan H. Grad

Using pan RNA-seq analysis to reveal the ubiquitous existence of 5′ and 3′ end small RNAs. Xiaofeng Xu, Haishuo Ji, Zhi Cheng, Xiufeng Jin, Xue Yao, Yanqiang Liu, Qiang Zhao, Tao Zhang, Jishou Ruan, Wenjun Bu, Ze Chen, Gao Shan

Staufen2 mediated RNA recognition and localization requires combinatorial action of multiple domains. Simone Heber, Imre Gaspar, Jan-Niklas Tants, Johannes Günther, Sandra M Fernández Moya, Robert Janowski, Anne Ephrussi, Michael Sattler, Dierk Niessing

Testing models of mRNA localization reveals robustness regulated by reducing transport between cells. Jonathan U Harrison, Richard M Parton, Ilan Davis, Ruth E Baker

Differential gene expression and the importance of regulatory ncRNAs in acidophilic microorganisms. Daniela S Aliaga Goltsman, Loren Hauser, Mauna Dasari, Brian C Thomas, Jillian F Banfield

Comprehensive Evaluation of Deep Learning Architectures for Prediction of DNA/RNA Sequence Binding Specificities. Ameni Trabelsi, Mohamed Chaabane, Asa Ben Hur

A note on some conjectures about combinatorial models for RNA secondary structures. Adam Zsolt Wagner

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