RNA preprints: W14/2019

Circular RNA circGTIC1 drives gastric TIC self-renewal to initiate gastric tumorigenesis and metastasis. Liyan Wang, Bin Li, Xuhua Xiao, Xiaoyuan Yi, Feifei He

Risk variant in miR-544a binding site in CCDC170 is associated with osteoporosis. Xinhong Liu, Yang Wang, Qin Tan, Yunqi He, Xin Zhao

mRNA Degradation Rates Are Coupled to Metabolic Status in Mycobacteria. Diego A. Vargas-Blanco, Ying Zhou, Luis Gutierrez Zamalloa, Tim Antonelli, Scarlet S. Shell

FilTar: Using RNA-Seq data to improve microRNA target prediction accuracy in animals. Thomas Bradley, Simon Moxon

A heterochromatin-specific RNA export pathway facilitates piRNA production. Mostafa F. ElMaghraby, Peter Refsing Andersen, Florian Pühringer, Katharina Meixner, Thomas Lendl, Laszlo Tirian, Julius Brennecke

Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitize Arabidopsis endosperm to paternal genome dosage. P. R. V. Satyaki, Mary Gehring

Molecular determinants of metazoan tricRNA biogenesis. Casey A. Schmidt, Joseph D. Giusto, Alicia Bao, Anita K. Hopper, A. Gregory Matera

RNA base pairing complexity in living cells visualized by correlated chemical probing. Anthony M. Mustoe, Nicole Lama, Patrick S. Irving, Samuel W. Olson, Kevin M. Weeks

dSreg: A bayesian model to integrate changes in splicing and RNA binding protein activity. Carlos Martí-Gómez, Enrique Lara-Pezzi, Fátima Sánchez-Cabo

MicroRNAs expressed from FSHR and aromatase genes target important ovarian functions. Ilmatar Rooda, Birgitta Kaselt, Andres Salumets, Agne Velthut-Meikas

Fast and unbiased purification of RNA-protein complexes after UV cross-linking. Erika C Urdaneta, Benedikt M Beckmann

Codon Bias Confers Stability to mRNAs via ILF2 in Humans. Fabian Hia, Sheng Fan Yang, Yuichi Shichino, Masanori Yoshinaga, Yasuhiro Murakawa, Alexis Vandenbon, Akira Fukao, Toshinobu Fujiwara, Markus Landthaler, Tohru Natsume, Shungo Adachi, Shintaro Iwasaki, Osamu Takeuchi

Quantitative Principles of cis-translational control by general mRNA sequence features in eukaryotes. Jingyi Jessica Li, Guo-Liang Chew, Mark D. Biggin

TDP-43 proteinopathy impairs neuronal mRNP granule mediated postsynaptic local translation and mRNA metabolism. Chia-En Wong, Kuen-Jer Tsai

The RNA binding protein DAZL functions as repressor and activator of maternal mRNA translation during oocyte maturation. Cai-Rong Yang, Gabriel Rajkovic, Enrico Maria Daldello, Xuan G. Luong, Jing Chen, Marco Conti

The rs6505162 C>A polymorphism in the miRNA-423 gene exhibits a protective element of coronary artery in a southern Chinese population with Kawasaki disease. Jiawen Li, Jinxin Wang, Xiaoping Su, Zhiyong Jiang, Xing Rong, Xueping Gu, Huixian Qiu, Lanlan Zeng, Hao Zheng, Xiaoqiong Gu, Maoping Chu

SSD1 suppresses phenotypes induced by the lack of Elongator-dependent tRNA modifications. Fu Xu, Anders Bystrom, Marcus Johansson

The piRNA Response to Retroviral Invasion of the Koala Genome. Tianxiong Yu, Birgit S. Koppetsch, Keith Chappell, Sara Pagliarani, Stephen Johnston, Zhiping Weng, William E. Theurkauf

Drosophila ribosomal protein S5b is essential for oogenesis and interacts with distinct RNAs. Jian Kong, Hong Han, Julie Bergalet, Louis Philip Benoit Bouvrette, Greco Hernández, Nam Sung Moon, Hojatollah Vali, Éric Lécuyer, Paul Lasko

Interplay Between Short-range Attraction and Long-range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes. Ibraheem Alshareedah, Taranpreet Kaur, Jason Ngo, Hannah Seppala, Liz-Audrey Djomnang Kounatse, Wei Wang, Mahdi Muhammad Moosa, Priya R Banerjee

Translation and Transforming Activity of a Circular RNA from Human Papillomavirus. Jiawei Zhao, Eunice E Lee, Jiwoong Kim, Bahir Chamseddin, Rong Yang, Yang Xie, Xiaowei Zhan, Richard Wang

3′-UTR shortening disrupts ceRNA crosstalk of housekeeping genes resulting in subtype-specific breast cancer development. Fan Zhenjiang, Soyeon Kim, Brenda Diergaarde, Hyun Jung Park

In silico analysis of coding SNPs and 3′-UTR associated miRNAs in DCAF17 gene that may affect the regulation and pathogenesis of Woodhouse-Sakati Syndrome. abdelrahman hamza abdelmoneim Sr., Asia M Elrashied, Alaa I Mohammed, Sara A Mirghani, Rania E Osman, Esraa O Gadim, Mohamed A Salih

Alternative Polyadenylation Modifies Target Sites of MicroRNAs with Clinical Potential for Breast Cancer Progression. Soyeon Kim, Yulong Bai, Brenda Diergaarde, George C. Tseng, Hyun Jung Park

BPPart and BPMax: RNA-RNA Interaction Partition Function and Structure Prediction for the Base Pair Counting Model. Ali Ebrahimpour-Boroojeny, Sanjay Rajopadhye, Hamidreza Chitsaz

 

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