Coupling of translation quality control and mRNA targeting to stress granules. Stephanie L. Moon, Tatsuya Morisaki, Timothy J. Stasevich, Roy Parker
Transfer of hepatocellular microRNA regulates cytochrome P450 2E1 in renal tubular cells. Olivia Matthews, Emma E Morrison, John D Tranter, Philip Starkey Lewis, Iqbal S Toor, Abhishek Srivastava, Rebecca Sargeant, Helen Rollison, Kylie P Matchett, Gillian A Gray, Chris Goldring, Kevin Park, Laura Denby, Neeraj Dhaun, Matthew A Bailey, Neil C Henderson, Dominic Williams, James W Dear
Assessing the Quality of Cotranscriptional Folding Simulations. Felix Kühnl, Peter F. Stadler, Sven Findeiß
miR-1290 stimulates proliferation of gastric cancer by targeting SP1 with overexpression of fucosyltransferase IV and α1, 3-fucosylated glycans. Faisal Aziz, Li Yulin, Qiu Yan
A transcriptional regulatory atlas of human pancreatic islets reveals non-coding functional signatures at GWAS loci. Arushi Varshney, Yasuhiro Kyono, Venkateswaran Ramamoorthi Elangovan, Collin Wang, Michael R. Erdos, Narisu Narisu, Ricardo D’Oliveira Albanus, Peter Orchard, Michael L. Stitzel, Francis S. Collins, Jacob O. Kitzman, Stephen C. J. Parker
The conserved herpesviral kinase ORF36 activates B2 retrotransposons during murine gammaherpesvirus infection. Aaron M. Schaller, Jessica Tucker, Ian Willis, Britt A. Glaunsinger
Recovery from transgenerational RNA silencing is driven by gene-specific homeostasis. Sindhuja Devanapally, Pravrutha Raman, Samual Allgood, Farida Ettefa, Maigane Diop, Mary Chey, Yixin Lin, Yongyi E Cho, Rui Yin, Antony M Jose
Post-transcriptional Regulation is the Major Driver of microRNA Expression Variation. Dingyao Zhang, Jingru Tian, Christine Roden, Jun Lu
RNA-binding protein Syncrip regulates Starvation-Induced Hyperactivity in adult Drosophila. Wanhao Chi, Wei Liu, Wenqin Fu, Ellie S. Heckscher, Xiaoxi Zhuang
siRNA-mediated de novo silencing of Ac/Ds transposons is initiated by alternative transposition in maize. Dafang Wang, Jianbo Zhang, Tao Zuo, Damon Lisch, Meixia Zhao, Thomas Peterson
Transcriptional elongation machinery controls vulnerability of breast cancer cells to PRC2 inhibitors. Ngai Ting Chan, Peng Liu, Junfeng Huang, Yidan Wang, Irene Ong, Lingjun Li, Wei Xu
Intergenic RNA mainly derives from nascent transcripts of known genes. Agostini Federico, Zagalak Julian, Attig Jan, Ule Jernej, Nicholas M. Luscombe
Inferring Disease-Associated Piwi-Interacting RNAs via Graph Attention Networks. Kai Zheng, Zhu-Hong You, Lei Wang, Leon Wong, Zhan-Heng Chen, Han-Jing Jiang
An interaction network of RNA-binding proteins involved in Drosophila oogenesis. Prashali Bansal, Johannes Madlung, Kristina Schaaf, Boris Macek, Fulvia Bono
Three Rules Explain Transgenerational Small RNA Inheritance in C. elegans. Leah Houri-Ze’evi, Olga Antonova, Oded Rechavi
In silico analyses reveal new putative Breast Cancer RNA-binding proteins. Santiago Guerrero, Andrés López-Cortés, Jennyfer M. García-Cárdenas, Isaac Armendáriz-Castillo, Ana Karina Zambrano, Alberto Indacochea, Andy Pérez-Villa, Verónica Yumiceba, Patricia Guevara-Ramírez, Andrea-Jácome-Alvarado, Paola E. Leone, César Paz-y-Miño
FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell. Sébastien Relier, Julie Ripoll, Hélène Guillorit, Amandine Amalric, Florence Boissière, Jérôme Vialaret, Aurore Attina, Françoise Debart, Armelle Choquet, Françoise Macari, Emmanuelle Samalin, Jean-Jacques Vasseur, Julie Pannequin, Evelyne Crapez, Christophe Hirtz, Eric Rivals, Amandine Bastide, Alexandre David
Quantifying the spatiotemporal dynamics of IRES versus Cap translation with single-molecule resolution in living cells. Amanda Koch, Luis Aguilera, Tatsuya Morisaki, Brian Munsky, Timothy J. Stasevich
Full-length LINE-1s with functional ORFs are favoured by host-level selection in human genomes. Heinrich zu Dohna, Bo Zhou, Xiaowei Zhu, Alexander E. Urban
Silencing of Mu elements in maize involves distinct populations of small RNAs and distinct patterns of DNA methylation. Diane Burgess, Hong Li, Meixia Zhao, Sang Yeol Kim, Damon Lisch
Free Energy Landscape and Conformational Kinetics of Hoogsteen Base-Pairing in DNA vs RNA. D. Ray, I. Andricioaei
mRNA localization is linked to translation regulation in the Caenorhabditis elegans germ lineage. Dylan M. Parker, Lindsay P. Winkenbach, Samuel P. Boyson, Matthew N. Saxton, Camryn Daidone, Zainab A. Al-Mazaydeh, Marc T. Nishimura, Florian Mueller, Erin Osborne Nishimura
CG14906 (mettl4) mediates m6A methylation of U2 snRNA in Drosophila. Lei Gu, Longfei Wang, Hao Chen, Jiaxu Hong, Zhangfei Shen, Abhinav Dhall, Taotao Lao, Chaozhong Liu, Zheng Wang, Yifan Xu, Hong-Wen Tang, Damayanti Chakraborty, Jiekai Chen, Zhihua Liu, Dragana Rogulja, Norbert Perrimon, Hao Wu, Yang Shi
Millipede genomes reveal unique adaptation of genes and microRNAs during myriapod evolution. Zhe Qu, Wenyan Nong, Wai Lok So, Tom Barton-Owen, Yiqian Li, Chade Li, Thomas C.N. Leung, Tobias Baril, Annette Y.P. Wong, Thomas Swale, Ting-Fung Chan, Alexander Hayward, Sai-Ming Ngai, Jerome H.L. Hui
Limits in the detection of m6A changes using MeRIP/m6A-seq. Alexa B.R. McIntyre, Nandan S. Gokhale, Leandro Cerchietti, Samie R. Jaffrey, Stacy M. Horner, Christopher E. Mason
Centrosome impairment causes DNA replication stress through MLK3/MK2 signaling and R-loop formation. Zainab Tayeh, Kim Stegmann, Antonia Kleeberg, Mascha Friedrich, Josephine Ann Mun Yee Choo, Bernd Wollnik, Matthias Dobbelstein
MicroRNA-574 Regulates FAM210A Expression and Influences Pathological Cardiac Remodeling. Jiangbin Wu, Kadiam C Venkata Subbaiah, Feng Jiang, Omar Hadaya, Amy Mohan, Tingting Yang, Kevin Welle, Sina Ghaemmaghami, Wai Hong Wilson Tang, Eric Small, Chen Yan, Peng Yao
Nanoscale Structure Determination of Murray Valley Encephalitis and Powassan Virus Non-coding RNAs. Tyler Mrozowich, Amy Henrickson, Borries Demeler, Trushar R Patel
Various miRNAs are involved in efficient HCV replication. Chikako Ono, Takasuke Fukuhara, Songling Li, Jian Wang, Asuka Sato, Takuma Izumi, Yuzy Fauzyah, Takuya Yamamoto, Yuhei Morioka, Nikolay V. Dokholyan, Daron M. Standley, Yoshiharu Matsuura
CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex. Jennifer V. Gerbracht, Volker Boehm, Thiago Britto-Borges, Sebastian Kallabis, Janica L. Wiederstein, Simona Ciriello, Dominik U. Aschemeier, Marcus Krüger, Christian K. Frese, Janine Altmüller, Christoph Dieterich, Niels H. Gehring
Endogenous polybasic polypeptides cause slower movement of ribosomes but are not targets of the ribosome quality control (RQC) complex. Géssica C. Barros, Rodrigo D. Requião, Rodolfo L. Carneiro, Claudio A. Masuda, Mariana H. Moreira, Silvana Rossetto, Tatiana Domitrovic, Fernando L. Palhano
Novel IRE1-dependent proinflammatory signaling controls tumor infiltration by myeloid cells. Joanna Obacz, Jérôme Archambeau, Daria Sicari, Pierre Jean Le Reste, Raphael Pineau, Sophie Martin, Kim Barroso, Efstathios Vlachavas, Konstantinos Voutetakis, Tanya Fainsod-Levi, Akram Obiedat, Zvi Granot, Boaz Tirosh, Juhi Samal, Abhay Pandit, John Patterson, Qinping Zheng, Luc Négroni, Aristotelis Chatziioannou, Véronique Quillien, Tony Avril, Eric Chevet
RNA splicing alterations induce a cellular stress response associated with poor prognosis in AML. Govardhan Anande, Nandan P. Deshpande, Sylvain Mareschal, Aarif M. N. Batcha, Henry R. Hampton, Tobias Herold, Soren Lehmann, Marc R. Wilkins, Jason W.H. Wong, Ashwin Unnikrishnan, John E. Pimanda
The RNA pseudoknots in foot-and-mouth disease virus are dispensable for genome replication but essential for the production of infectious virus. Joseph C. Ward, Lidia Lasecka-Dykes, Chris Neil, Oluwapelumi Adeyemi, Sarah Gold, Niall McLean, Caroline Wright, Morgan R. Herod, David Kealy, Emma Warner, Donald P. King, Tobias J. Tuthill, David J. Rowlands, Nicola J. Stonehouse
A 4-base pair core-enclosing helix in telomerase RNA is essential and binds to the TERT catalytic protein subunit. Melissa A. Mefford, Evan P. Hass, David C. Zappulla
Phase Transition of RNA-protein Complexes into Ordered Hollow Condensates. Ibraheem Alshareedah, Mahdi Muhammad Moosa, Muralikrishna Raju, Davit Potoyan, Priya R. Banerjee
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